Hb_021409_060

Information

Type -
Description -
Location Contig21409: 25513-27435
Sequence    

Annotation

kegg
ID rcu:RCOM_1312900
description hypothetical protein
nr
ID XP_012086652.1
description PREDICTED: aluminum-activated malate transporter 10-like [Jatropha curcas]
swissprot
ID O23086
description Aluminum-activated malate transporter 10 OS=Arabidopsis thaliana GN=ALMT10 PE=3 SV=2
trembl
ID A0A067JR23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20394 PE=4 SV=1
Gene Ontology
ID GO:0015743
description aluminum-activated malate transporter 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021409_060 0.0 - - PREDICTED: aluminum-activated malate transporter 10-like [Jatropha curcas]
2 Hb_168436_010 0.0047253279 - - PREDICTED: probable receptor-like protein kinase At1g67000-like [Citrus sinensis]
3 Hb_002127_010 0.0132764996 - - Aluminum activated malate transporter family protein, putative [Theobroma cacao]
4 Hb_004899_160 0.0209449019 - - -
5 Hb_001268_360 0.0224334386 - - PREDICTED: uncharacterized protein LOC104447679 [Eucalyptus grandis]
6 Hb_156055_020 0.0286888692 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010896_010 0.0295211964 - - -
8 Hb_119789_010 0.0375772898 - - PREDICTED: uncharacterized protein LOC105134438 [Populus euphratica]
9 Hb_067197_020 0.0406480303 - - -
10 Hb_000896_140 0.0591836709 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]
11 Hb_007040_030 0.0597943184 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
12 Hb_081445_010 0.0607555948 - - hypothetical protein JCGZ_04541 [Jatropha curcas]
13 Hb_101733_020 0.0613605094 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Jatropha curcas]
14 Hb_000926_170 0.066331757 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000672_070 0.0705552846 - - PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
16 Hb_048826_010 0.0815973346 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB28-like [Jatropha curcas]
17 Hb_002582_090 0.0842487817 - - PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum]
18 Hb_132148_010 0.0938877585 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
19 Hb_000002_130 0.108871835 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
20 Hb_005843_070 0.1127027999 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]

Gene co-expression network

sample Hb_021409_060 Hb_021409_060 Hb_168436_010 Hb_168436_010 Hb_021409_060--Hb_168436_010 Hb_002127_010 Hb_002127_010 Hb_021409_060--Hb_002127_010 Hb_004899_160 Hb_004899_160 Hb_021409_060--Hb_004899_160 Hb_001268_360 Hb_001268_360 Hb_021409_060--Hb_001268_360 Hb_156055_020 Hb_156055_020 Hb_021409_060--Hb_156055_020 Hb_010896_010 Hb_010896_010 Hb_021409_060--Hb_010896_010 Hb_168436_010--Hb_002127_010 Hb_168436_010--Hb_001268_360 Hb_168436_010--Hb_010896_010 Hb_168436_010--Hb_004899_160 Hb_168436_010--Hb_156055_020 Hb_002127_010--Hb_001268_360 Hb_002127_010--Hb_010896_010 Hb_067197_020 Hb_067197_020 Hb_002127_010--Hb_067197_020 Hb_002127_010--Hb_004899_160 Hb_004899_160--Hb_156055_020 Hb_119789_010 Hb_119789_010 Hb_004899_160--Hb_119789_010 Hb_000896_140 Hb_000896_140 Hb_004899_160--Hb_000896_140 Hb_001268_360--Hb_010896_010 Hb_001268_360--Hb_067197_020 Hb_081445_010 Hb_081445_010 Hb_001268_360--Hb_081445_010 Hb_156055_020--Hb_119789_010 Hb_156055_020--Hb_000896_140 Hb_007040_030 Hb_007040_030 Hb_156055_020--Hb_007040_030 Hb_010896_010--Hb_067197_020 Hb_010896_010--Hb_081445_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.118519 0.0214597 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis