Hb_021409_080

Information

Type -
Description -
Location Contig21409: 60169-64798
Sequence    

Annotation

kegg
ID pop:POPTR_0003s14460g
description POPTRDRAFT_817435; ORMDL family protein
nr
ID XP_012086657.1
description PREDICTED: ORM1-like protein 1 [Jatropha curcas]
swissprot
ID Q921I0
description ORM1-like protein 1 OS=Mus musculus GN=Ormdl1 PE=2 SV=1
trembl
ID A0A067JMQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20397 PE=4 SV=1
Gene Ontology
ID GO:0005789
description orm1-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22116: 60202-64954
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021409_080 0.0 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
2 Hb_012305_130 0.0646899105 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
3 Hb_111985_110 0.0762161032 - - thioredoxin H-type 3 [Hevea brasiliensis]
4 Hb_004627_030 0.088663517 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
5 Hb_180343_010 0.0939383834 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
6 Hb_002110_100 0.0979381529 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
7 Hb_000110_120 0.1000413732 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
8 Hb_000428_060 0.1006423261 - - malate dehydrogenase, putative [Ricinus communis]
9 Hb_002301_160 0.1010583582 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
10 Hb_000590_120 0.11248383 - - dehydroascorbate reductase, putative [Ricinus communis]
11 Hb_028049_010 0.1132193341 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
12 Hb_010560_050 0.1133496307 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
13 Hb_000417_100 0.1145377593 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
14 Hb_006573_290 0.1149299358 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
15 Hb_027073_010 0.1158866015 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
16 Hb_066842_010 0.1164025906 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
17 Hb_004007_110 0.1167158922 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
18 Hb_001269_190 0.1175195733 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
19 Hb_004800_100 0.1176667851 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000407_070 0.1185338954 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_021409_080 Hb_021409_080 Hb_012305_130 Hb_012305_130 Hb_021409_080--Hb_012305_130 Hb_111985_110 Hb_111985_110 Hb_021409_080--Hb_111985_110 Hb_004627_030 Hb_004627_030 Hb_021409_080--Hb_004627_030 Hb_180343_010 Hb_180343_010 Hb_021409_080--Hb_180343_010 Hb_002110_100 Hb_002110_100 Hb_021409_080--Hb_002110_100 Hb_000110_120 Hb_000110_120 Hb_021409_080--Hb_000110_120 Hb_012305_130--Hb_000110_120 Hb_000964_030 Hb_000964_030 Hb_012305_130--Hb_000964_030 Hb_028049_010 Hb_028049_010 Hb_012305_130--Hb_028049_010 Hb_012305_130--Hb_002110_100 Hb_012305_130--Hb_004627_030 Hb_000417_100 Hb_000417_100 Hb_111985_110--Hb_000417_100 Hb_000407_070 Hb_000407_070 Hb_111985_110--Hb_000407_070 Hb_111985_110--Hb_004627_030 Hb_111985_110--Hb_012305_130 Hb_006573_290 Hb_006573_290 Hb_111985_110--Hb_006573_290 Hb_004800_100 Hb_004800_100 Hb_004627_030--Hb_004800_100 Hb_002301_160 Hb_002301_160 Hb_004627_030--Hb_002301_160 Hb_002045_070 Hb_002045_070 Hb_004627_030--Hb_002045_070 Hb_000300_430 Hb_000300_430 Hb_004627_030--Hb_000300_430 Hb_008147_090 Hb_008147_090 Hb_180343_010--Hb_008147_090 Hb_001662_130 Hb_001662_130 Hb_180343_010--Hb_001662_130 Hb_000392_340 Hb_000392_340 Hb_180343_010--Hb_000392_340 Hb_001489_110 Hb_001489_110 Hb_180343_010--Hb_001489_110 Hb_002184_090 Hb_002184_090 Hb_180343_010--Hb_002184_090 Hb_032920_070 Hb_032920_070 Hb_002110_100--Hb_032920_070 Hb_003305_040 Hb_003305_040 Hb_002110_100--Hb_003305_040 Hb_002392_010 Hb_002392_010 Hb_002110_100--Hb_002392_010 Hb_004158_020 Hb_004158_020 Hb_002110_100--Hb_004158_020 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070 Hb_005701_120 Hb_005701_120 Hb_002110_100--Hb_005701_120 Hb_000110_120--Hb_002301_160 Hb_005460_060 Hb_005460_060 Hb_000110_120--Hb_005460_060 Hb_000009_290 Hb_000009_290 Hb_000110_120--Hb_000009_290 Hb_000110_120--Hb_004627_030 Hb_000077_180 Hb_000077_180 Hb_000110_120--Hb_000077_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5272 16.6844 38.1852 91.0624 10.3595 11.2318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.7832 46.931 44.4353 35.0448 37.4769

CAGE analysis