Hb_021409_090

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig21409: 66707-68830
Sequence    

Annotation

kegg
ID pop:POPTR_0003s14450g
description POPTRDRAFT_1074213; hypothetical protein
nr
ID XP_002303678.1
description hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
swissprot
ID Q8LAP8
description Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2
trembl
ID B9GXU9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s14450g PE=4 SV=1
Gene Ontology
ID GO:0003677
description f-box family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22118: 66637-68649
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021409_090 0.0 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
2 Hb_002217_450 0.0828600224 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
3 Hb_187083_010 0.0844344287 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
4 Hb_000199_070 0.0853093748 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000236_460 0.0856254225 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
6 Hb_011161_050 0.0929276696 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
7 Hb_003561_030 0.0948003638 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
8 Hb_005841_050 0.0964716891 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
9 Hb_010812_010 0.1009847525 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
10 Hb_002835_320 0.1082828387 - - 60S ribosomal protein L27B [Hevea brasiliensis]
11 Hb_004041_040 0.1093248929 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
12 Hb_000272_070 0.1103491313 - - snare protein YKt [Hevea brasiliensis]
13 Hb_000163_130 0.1120610463 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
14 Hb_001123_120 0.1122775713 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
15 Hb_002320_060 0.1123843582 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
16 Hb_000395_240 0.1146646022 - - hypothetical protein CICLE_v10010039mg [Citrus clementina]
17 Hb_017862_010 0.1160545633 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
18 Hb_001141_030 0.1179571808 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
19 Hb_002539_090 0.1182909143 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
20 Hb_010172_030 0.119895629 - - hypothetical protein JCGZ_04668 [Jatropha curcas]

Gene co-expression network

sample Hb_021409_090 Hb_021409_090 Hb_002217_450 Hb_002217_450 Hb_021409_090--Hb_002217_450 Hb_187083_010 Hb_187083_010 Hb_021409_090--Hb_187083_010 Hb_000199_070 Hb_000199_070 Hb_021409_090--Hb_000199_070 Hb_000236_460 Hb_000236_460 Hb_021409_090--Hb_000236_460 Hb_011161_050 Hb_011161_050 Hb_021409_090--Hb_011161_050 Hb_003561_030 Hb_003561_030 Hb_021409_090--Hb_003561_030 Hb_001141_030 Hb_001141_030 Hb_002217_450--Hb_001141_030 Hb_003203_040 Hb_003203_040 Hb_002217_450--Hb_003203_040 Hb_003398_120 Hb_003398_120 Hb_002217_450--Hb_003398_120 Hb_005841_050 Hb_005841_050 Hb_002217_450--Hb_005841_050 Hb_001863_400 Hb_001863_400 Hb_002217_450--Hb_001863_400 Hb_000367_210 Hb_000367_210 Hb_187083_010--Hb_000367_210 Hb_187083_010--Hb_003561_030 Hb_187083_010--Hb_000236_460 Hb_000163_130 Hb_000163_130 Hb_187083_010--Hb_000163_130 Hb_187083_010--Hb_011161_050 Hb_003058_220 Hb_003058_220 Hb_000199_070--Hb_003058_220 Hb_000199_070--Hb_011161_050 Hb_002701_050 Hb_002701_050 Hb_000199_070--Hb_002701_050 Hb_008847_020 Hb_008847_020 Hb_000199_070--Hb_008847_020 Hb_130291_010 Hb_130291_010 Hb_000199_070--Hb_130291_010 Hb_003549_020 Hb_003549_020 Hb_000236_460--Hb_003549_020 Hb_097007_010 Hb_097007_010 Hb_000236_460--Hb_097007_010 Hb_000085_330 Hb_000085_330 Hb_000236_460--Hb_000085_330 Hb_001123_120 Hb_001123_120 Hb_000236_460--Hb_001123_120 Hb_010812_010 Hb_010812_010 Hb_011161_050--Hb_010812_010 Hb_000975_110 Hb_000975_110 Hb_011161_050--Hb_000975_110 Hb_011161_050--Hb_003561_030 Hb_000364_020 Hb_000364_020 Hb_011161_050--Hb_000364_020 Hb_000086_550 Hb_000086_550 Hb_011161_050--Hb_000086_550 Hb_000722_040 Hb_000722_040 Hb_003561_030--Hb_000722_040 Hb_003561_030--Hb_000975_110 Hb_003561_030--Hb_000367_210 Hb_000272_070 Hb_000272_070 Hb_003561_030--Hb_000272_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.9509 6.71982 9.98469 46.1845 41.5555 78.9796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.2049 222.759 104.395 27.7296 9.73577

CAGE analysis