Hb_021409_110

Information

Type -
Description -
Location Contig21409: 80275-83833
Sequence    

Annotation

kegg
ID rcu:RCOM_1312720
description WD-repeat protein, putative
nr
ID XP_002518879.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q498F0
description WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1
trembl
ID B9RYR0
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1312720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22119: 80357-83762
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021409_110 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_007224_010 0.0979539674 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
3 Hb_089305_010 0.1143383544 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
4 Hb_001621_050 0.1211641881 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
5 Hb_000110_260 0.1240907742 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
6 Hb_001863_340 0.1277918732 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
7 Hb_005725_280 0.131105171 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
8 Hb_000336_180 0.1319361694 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004678_010 0.1367686442 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
10 Hb_001519_060 0.1398737971 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
11 Hb_001627_010 0.1401438719 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
12 Hb_091318_010 0.1415738819 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
13 Hb_002997_110 0.1481186703 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
14 Hb_000120_090 0.1495184025 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
15 Hb_010812_060 0.1564018594 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
16 Hb_000928_250 0.1564902699 - - calcium ion binding protein, putative [Ricinus communis]
17 Hb_001294_050 0.157875098 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
18 Hb_132840_020 0.158086109 - - PREDICTED: protein LHY [Jatropha curcas]
19 Hb_000181_330 0.1589181821 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
20 Hb_000915_130 0.1589586769 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_021409_110 Hb_021409_110 Hb_007224_010 Hb_007224_010 Hb_021409_110--Hb_007224_010 Hb_089305_010 Hb_089305_010 Hb_021409_110--Hb_089305_010 Hb_001621_050 Hb_001621_050 Hb_021409_110--Hb_001621_050 Hb_000110_260 Hb_000110_260 Hb_021409_110--Hb_000110_260 Hb_001863_340 Hb_001863_340 Hb_021409_110--Hb_001863_340 Hb_005725_280 Hb_005725_280 Hb_021409_110--Hb_005725_280 Hb_001627_010 Hb_001627_010 Hb_007224_010--Hb_001627_010 Hb_132840_020 Hb_132840_020 Hb_007224_010--Hb_132840_020 Hb_001519_060 Hb_001519_060 Hb_007224_010--Hb_001519_060 Hb_000086_640 Hb_000086_640 Hb_007224_010--Hb_000086_640 Hb_000928_250 Hb_000928_250 Hb_007224_010--Hb_000928_250 Hb_000120_090 Hb_000120_090 Hb_089305_010--Hb_000120_090 Hb_089305_010--Hb_001621_050 Hb_000567_330 Hb_000567_330 Hb_089305_010--Hb_000567_330 Hb_010812_060 Hb_010812_060 Hb_089305_010--Hb_010812_060 Hb_089305_010--Hb_000110_260 Hb_001621_050--Hb_000120_090 Hb_001621_050--Hb_005725_280 Hb_000077_160 Hb_000077_160 Hb_001621_050--Hb_000077_160 Hb_001102_200 Hb_001102_200 Hb_001621_050--Hb_001102_200 Hb_000110_260--Hb_001102_200 Hb_000110_260--Hb_000120_090 Hb_005408_080 Hb_005408_080 Hb_000110_260--Hb_005408_080 Hb_091318_010 Hb_091318_010 Hb_000110_260--Hb_091318_010 Hb_000035_490 Hb_000035_490 Hb_001863_340--Hb_000035_490 Hb_001021_100 Hb_001021_100 Hb_001863_340--Hb_001021_100 Hb_002030_110 Hb_002030_110 Hb_001863_340--Hb_002030_110 Hb_000748_110 Hb_000748_110 Hb_001863_340--Hb_000748_110 Hb_001250_040 Hb_001250_040 Hb_001863_340--Hb_001250_040 Hb_000336_180 Hb_000336_180 Hb_005725_280--Hb_000336_180 Hb_094437_050 Hb_094437_050 Hb_005725_280--Hb_094437_050 Hb_000892_030 Hb_000892_030 Hb_005725_280--Hb_000892_030 Hb_002498_250 Hb_002498_250 Hb_005725_280--Hb_002498_250 Hb_004218_080 Hb_004218_080 Hb_005725_280--Hb_004218_080 Hb_007193_030 Hb_007193_030 Hb_005725_280--Hb_007193_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.963801 11.0951 16.6795 10.388 1.01271 0.813303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.99731 1.26873 1.19823 0.726871 9.24186

CAGE analysis