Hb_021409_120

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig21409: 87849-89132
Sequence    

Annotation

kegg
ID rcu:RCOM_1312710
description r2r3-myb transcription factor, putative
nr
ID XP_002518878.1
description r2r3-myb transcription factor, putative [Ricinus communis]
swissprot
ID O22264
description Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1
trembl
ID B9RYQ9
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_1312710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021409_120 0.0 transcription factor TF Family: MYB-related r2r3-myb transcription factor, putative [Ricinus communis]
2 Hb_000770_010 0.1237363255 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
3 Hb_006483_090 0.1341670564 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
4 Hb_004032_330 0.1377552944 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
5 Hb_000270_250 0.1503997749 transcription factor TF Family: MYB hypothetical protein POPTR_0015s07900g [Populus trichocarpa]
6 Hb_000500_230 0.1521774136 - - hypothetical protein RCOM_0634810 [Ricinus communis]
7 Hb_000007_440 0.1544706187 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
8 Hb_000260_480 0.1559971956 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
9 Hb_011287_060 0.1582371075 - - -
10 Hb_007483_080 0.160460933 - - hypothetical protein RCOM_0634810 [Ricinus communis]
11 Hb_002849_180 0.1608930924 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
12 Hb_001141_060 0.1677092043 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
13 Hb_002010_080 0.17016092 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
14 Hb_004604_030 0.1709225138 - - unnamed protein product [Coffea canephora]
15 Hb_001147_030 0.1713129393 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
16 Hb_004837_110 0.1715266533 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
17 Hb_002871_110 0.174725655 transcription factor TF Family: ARF hypothetical protein POPTR_0014s12980g [Populus trichocarpa]
18 Hb_028928_020 0.1750393802 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
19 Hb_000836_320 0.1750560511 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
20 Hb_005016_100 0.1753329955 - - -

Gene co-expression network

sample Hb_021409_120 Hb_021409_120 Hb_000770_010 Hb_000770_010 Hb_021409_120--Hb_000770_010 Hb_006483_090 Hb_006483_090 Hb_021409_120--Hb_006483_090 Hb_004032_330 Hb_004032_330 Hb_021409_120--Hb_004032_330 Hb_000270_250 Hb_000270_250 Hb_021409_120--Hb_000270_250 Hb_000500_230 Hb_000500_230 Hb_021409_120--Hb_000500_230 Hb_000007_440 Hb_000007_440 Hb_021409_120--Hb_000007_440 Hb_000770_010--Hb_004032_330 Hb_005016_100 Hb_005016_100 Hb_000770_010--Hb_005016_100 Hb_000770_010--Hb_006483_090 Hb_004864_020 Hb_004864_020 Hb_000770_010--Hb_004864_020 Hb_000679_260 Hb_000679_260 Hb_000770_010--Hb_000679_260 Hb_000477_110 Hb_000477_110 Hb_006483_090--Hb_000477_110 Hb_002849_180 Hb_002849_180 Hb_006483_090--Hb_002849_180 Hb_006269_010 Hb_006269_010 Hb_006483_090--Hb_006269_010 Hb_001153_090 Hb_001153_090 Hb_006483_090--Hb_001153_090 Hb_006483_090--Hb_000007_440 Hb_007483_080 Hb_007483_080 Hb_006483_090--Hb_007483_080 Hb_004032_330--Hb_005016_100 Hb_004604_030 Hb_004604_030 Hb_004032_330--Hb_004604_030 Hb_027337_030 Hb_027337_030 Hb_004032_330--Hb_027337_030 Hb_003077_140 Hb_003077_140 Hb_004032_330--Hb_003077_140 Hb_000427_040 Hb_000427_040 Hb_000270_250--Hb_000427_040 Hb_032779_010 Hb_032779_010 Hb_000270_250--Hb_032779_010 Hb_003073_040 Hb_003073_040 Hb_000270_250--Hb_003073_040 Hb_000270_250--Hb_000500_230 Hb_004880_050 Hb_004880_050 Hb_000270_250--Hb_004880_050 Hb_001147_030 Hb_001147_030 Hb_000270_250--Hb_001147_030 Hb_006970_170 Hb_006970_170 Hb_000500_230--Hb_006970_170 Hb_000010_370 Hb_000010_370 Hb_000500_230--Hb_000010_370 Hb_000260_480 Hb_000260_480 Hb_000500_230--Hb_000260_480 Hb_007894_120 Hb_007894_120 Hb_000500_230--Hb_007894_120 Hb_002871_110 Hb_002871_110 Hb_000500_230--Hb_002871_110 Hb_017491_010 Hb_017491_010 Hb_000500_230--Hb_017491_010 Hb_000007_440--Hb_007483_080 Hb_000007_440--Hb_002849_180 Hb_002010_100 Hb_002010_100 Hb_000007_440--Hb_002010_100 Hb_001158_120 Hb_001158_120 Hb_000007_440--Hb_001158_120 Hb_000007_440--Hb_006970_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.15536 0.109263 0.0934936 0 0.0247886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0410048 0.102139

CAGE analysis