Hb_021409_160

Information

Type -
Description -
Location Contig21409: 118750-119001
Sequence    

Annotation

kegg
ID pop:POPTR_0001s11040g
description hypothetical protein
nr
ID XP_002299446.1
description hypothetical protein POPTR_0001s11040g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GL15
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s11040g PE=4 SV=1
Gene Ontology
ID GO:0005634
description hypothetical protein POPTR_0001s11040g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22127: 119781-127545
cDNA
(Sanger)
(ID:Location)		 043_C20.ab1: 118457-119051

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021409_160 0.0 - - hypothetical protein POPTR_0001s11040g [Populus trichocarpa]
2 Hb_000563_250 0.08545604 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
3 Hb_002056_060 0.0889713104 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
4 Hb_000120_680 0.0940632082 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
5 Hb_000622_090 0.0961853014 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
6 Hb_000125_030 0.0990776672 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
7 Hb_000240_090 0.1034055255 - - Rab5 [Hevea brasiliensis]
8 Hb_000072_080 0.1036243063 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
9 Hb_002798_050 0.1040184868 - - l-allo-threonine aldolase, putative [Ricinus communis]
10 Hb_005431_010 0.1043650345 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
11 Hb_010407_180 0.1046246352 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
12 Hb_007382_150 0.1046451633 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
13 Hb_000347_410 0.1058812705 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
14 Hb_001616_030 0.1076084438 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
15 Hb_021409_030 0.108998522 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
16 Hb_129204_030 0.1107955777 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
17 Hb_011173_050 0.1109003687 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
18 Hb_000173_220 0.1117075207 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
19 Hb_032803_010 0.1134369082 - - PREDICTED: glycosyltransferase-like At2g41451 [Jatropha curcas]
20 Hb_000069_550 0.1144141077 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_021409_160 Hb_021409_160 Hb_000563_250 Hb_000563_250 Hb_021409_160--Hb_000563_250 Hb_002056_060 Hb_002056_060 Hb_021409_160--Hb_002056_060 Hb_000120_680 Hb_000120_680 Hb_021409_160--Hb_000120_680 Hb_000622_090 Hb_000622_090 Hb_021409_160--Hb_000622_090 Hb_000125_030 Hb_000125_030 Hb_021409_160--Hb_000125_030 Hb_000240_090 Hb_000240_090 Hb_021409_160--Hb_000240_090 Hb_001616_030 Hb_001616_030 Hb_000563_250--Hb_001616_030 Hb_000563_250--Hb_000120_680 Hb_000563_250--Hb_000240_090 Hb_021409_030 Hb_021409_030 Hb_000563_250--Hb_021409_030 Hb_000086_280 Hb_000086_280 Hb_000563_250--Hb_000086_280 Hb_004993_050 Hb_004993_050 Hb_002056_060--Hb_004993_050 Hb_007943_090 Hb_007943_090 Hb_002056_060--Hb_007943_090 Hb_002056_060--Hb_000125_030 Hb_000072_080 Hb_000072_080 Hb_002056_060--Hb_000072_080 Hb_002056_060--Hb_000120_680 Hb_005431_010 Hb_005431_010 Hb_002056_060--Hb_005431_010 Hb_000617_150 Hb_000617_150 Hb_000120_680--Hb_000617_150 Hb_000120_680--Hb_000240_090 Hb_004635_100 Hb_004635_100 Hb_000120_680--Hb_004635_100 Hb_001699_130 Hb_001699_130 Hb_000120_680--Hb_001699_130 Hb_000120_680--Hb_000622_090 Hb_000622_090--Hb_000240_090 Hb_004994_100 Hb_004994_100 Hb_000622_090--Hb_004994_100 Hb_000622_090--Hb_000563_250 Hb_004126_070 Hb_004126_070 Hb_000622_090--Hb_004126_070 Hb_000406_120 Hb_000406_120 Hb_000125_030--Hb_000406_120 Hb_003642_050 Hb_003642_050 Hb_000125_030--Hb_003642_050 Hb_003504_020 Hb_003504_020 Hb_000125_030--Hb_003504_020 Hb_000141_020 Hb_000141_020 Hb_000125_030--Hb_000141_020 Hb_010407_180 Hb_010407_180 Hb_000125_030--Hb_010407_180 Hb_000240_090--Hb_004635_100 Hb_129204_030 Hb_129204_030 Hb_000240_090--Hb_129204_030 Hb_000347_410 Hb_000347_410 Hb_000240_090--Hb_000347_410 Hb_029866_020 Hb_029866_020 Hb_000240_090--Hb_029866_020 Hb_000240_090--Hb_021409_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
111.413 70.8378 32.326 83.14 83.791 55.0579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
183.192 266.839 283.745 51.3419 59.0818

CAGE analysis