Hb_021409_180

Information

Type -
Description -
Location Contig21409: 128185-139287
Sequence    

Annotation

kegg
ID tcc:TCM_016517
description Carbon-nitrogen hydrolase family protein isoform 1
nr
ID XP_012086669.1
description PREDICTED: glutamine-dependent NAD(+) synthetase [Jatropha curcas]
swissprot
ID Q9C723
description Glutamine-dependent NAD(+) synthetase OS=Arabidopsis thaliana GN=At1g55090 PE=2 SV=1
trembl
ID A0A067K0F3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20410 PE=4 SV=1
Gene Ontology
ID GO:0005829
description glutamine-dependent nad(+) synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22128: 129393-130292 , PASA_asmbl_22129: 130813-131333 , PASA_asmbl_22130: 133068-139265 , PASA_asmbl_22131: 135931-136461 , PASA_asmbl_22132: 131401-132392 , PASA_asmbl_22133: 131401-138579
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021409_180 0.0 - - PREDICTED: glutamine-dependent NAD(+) synthetase [Jatropha curcas]
2 Hb_000599_180 0.0825125403 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_001205_120 0.0842421627 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
4 Hb_001472_060 0.0844987924 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Jatropha curcas]
5 Hb_023344_120 0.0869403001 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
6 Hb_032986_010 0.0883122726 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
7 Hb_000808_050 0.0937546197 - - exonuclease, putative [Ricinus communis]
8 Hb_001141_020 0.0939653426 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
9 Hb_000062_370 0.0970799735 - - beta-ketoacyl-ACP reductase [Vernicia fordii]
10 Hb_000050_190 0.0988841382 - - conserved hypothetical protein [Ricinus communis]
11 Hb_062135_030 0.0997652319 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
12 Hb_008511_130 0.0998841505 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
13 Hb_005488_020 0.10046145 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
14 Hb_000915_260 0.1014907016 - - PREDICTED: uncharacterized protein LOC105628514 isoform X1 [Jatropha curcas]
15 Hb_002997_080 0.1020382749 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
16 Hb_000335_030 0.1024194136 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Jatropha curcas]
17 Hb_011129_040 0.1032577632 - - PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
18 Hb_000136_110 0.1033453464 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
19 Hb_000340_420 0.1036452184 - - PREDICTED: LEC14B protein isoform X2 [Jatropha curcas]
20 Hb_000094_300 0.1038607277 - - hypothetical protein POPTR_0002s26360g [Populus trichocarpa]

Gene co-expression network

sample Hb_021409_180 Hb_021409_180 Hb_000599_180 Hb_000599_180 Hb_021409_180--Hb_000599_180 Hb_001205_120 Hb_001205_120 Hb_021409_180--Hb_001205_120 Hb_001472_060 Hb_001472_060 Hb_021409_180--Hb_001472_060 Hb_023344_120 Hb_023344_120 Hb_021409_180--Hb_023344_120 Hb_032986_010 Hb_032986_010 Hb_021409_180--Hb_032986_010 Hb_000808_050 Hb_000808_050 Hb_021409_180--Hb_000808_050 Hb_001001_080 Hb_001001_080 Hb_000599_180--Hb_001001_080 Hb_000050_190 Hb_000050_190 Hb_000599_180--Hb_000050_190 Hb_000340_420 Hb_000340_420 Hb_000599_180--Hb_000340_420 Hb_000599_180--Hb_000808_050 Hb_002542_020 Hb_002542_020 Hb_000599_180--Hb_002542_020 Hb_000441_220 Hb_000441_220 Hb_001205_120--Hb_000441_220 Hb_002044_150 Hb_002044_150 Hb_001205_120--Hb_002044_150 Hb_001584_140 Hb_001584_140 Hb_001205_120--Hb_001584_140 Hb_001205_120--Hb_023344_120 Hb_000915_260 Hb_000915_260 Hb_001205_120--Hb_000915_260 Hb_168978_030 Hb_168978_030 Hb_001205_120--Hb_168978_030 Hb_003531_080 Hb_003531_080 Hb_001472_060--Hb_003531_080 Hb_004097_130 Hb_004097_130 Hb_001472_060--Hb_004097_130 Hb_001472_060--Hb_000808_050 Hb_001472_060--Hb_001205_120 Hb_000019_150 Hb_000019_150 Hb_001472_060--Hb_000019_150 Hb_006634_070 Hb_006634_070 Hb_023344_120--Hb_006634_070 Hb_000676_250 Hb_000676_250 Hb_023344_120--Hb_000676_250 Hb_006455_120 Hb_006455_120 Hb_023344_120--Hb_006455_120 Hb_027380_130 Hb_027380_130 Hb_023344_120--Hb_027380_130 Hb_011995_010 Hb_011995_010 Hb_023344_120--Hb_011995_010 Hb_005269_070 Hb_005269_070 Hb_023344_120--Hb_005269_070 Hb_002997_080 Hb_002997_080 Hb_032986_010--Hb_002997_080 Hb_000317_470 Hb_000317_470 Hb_032986_010--Hb_000317_470 Hb_000883_020 Hb_000883_020 Hb_032986_010--Hb_000883_020 Hb_009545_080 Hb_009545_080 Hb_032986_010--Hb_009545_080 Hb_002272_130 Hb_002272_130 Hb_032986_010--Hb_002272_130 Hb_032986_010--Hb_023344_120 Hb_000141_250 Hb_000141_250 Hb_000808_050--Hb_000141_250 Hb_000808_050--Hb_002542_020 Hb_008511_130 Hb_008511_130 Hb_000808_050--Hb_008511_130 Hb_006817_010 Hb_006817_010 Hb_000808_050--Hb_006817_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4109 6.4744 12.1195 10.7492 9.2288 10.913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9189 5.33335 12.6687 7.63715 12.5878

CAGE analysis