Hb_021418_010

Information

Type -
Description -
Location Contig21418: 1-3018
Sequence    

Annotation

kegg
ID pmum:103339811
description probable pectate lyase 12
nr
ID XP_008241385.1
description PREDICTED: probable pectate lyase 12 [Prunus mume]
swissprot
ID Q9SCP2
description Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2
trembl
ID B9S0E1
description Pectate lyase OS=Ricinus communis GN=RCOM_1353560 PE=3 SV=1
Gene Ontology
ID GO:0031225
description probable pectate lyase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021418_010 0.0 - - PREDICTED: probable pectate lyase 12 [Prunus mume]
2 Hb_000077_450 0.0986083302 - - o-methyltransferase, putative [Ricinus communis]
3 Hb_081282_010 0.1017450391 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
4 Hb_001596_030 0.1067560035 - - PREDICTED: uncharacterized protein LOC105141672 [Populus euphratica]
5 Hb_011452_020 0.1067715735 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
6 Hb_007181_080 0.1108548967 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
7 Hb_003090_230 0.1156416559 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000380_210 0.1189463812 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
9 Hb_000676_380 0.1219045029 - - cytochrome P450 family protein [Populus trichocarpa]
10 Hb_000540_030 0.125505339 - - Chitinase 1 precursor, putative [Ricinus communis]
11 Hb_006120_010 0.127960495 - - invertase inhibitor [Manihot esculenta]
12 Hb_000967_010 0.132747385 - - hypothetical protein JCGZ_08336 [Jatropha curcas]
13 Hb_005144_180 0.1327512231 - - PREDICTED: protein enabled homolog [Populus euphratica]
14 Hb_008727_030 0.13899419 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010571_010 0.1450417906 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
16 Hb_046191_010 0.1463182049 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_002301_420 0.1474771117 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
18 Hb_001522_050 0.148341004 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Jatropha curcas]
19 Hb_003469_030 0.149525105 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
20 Hb_003789_020 0.1506627167 - - hypothetical protein JCGZ_23602 [Jatropha curcas]

Gene co-expression network

sample Hb_021418_010 Hb_021418_010 Hb_000077_450 Hb_000077_450 Hb_021418_010--Hb_000077_450 Hb_081282_010 Hb_081282_010 Hb_021418_010--Hb_081282_010 Hb_001596_030 Hb_001596_030 Hb_021418_010--Hb_001596_030 Hb_011452_020 Hb_011452_020 Hb_021418_010--Hb_011452_020 Hb_007181_080 Hb_007181_080 Hb_021418_010--Hb_007181_080 Hb_003090_230 Hb_003090_230 Hb_021418_010--Hb_003090_230 Hb_000077_450--Hb_011452_020 Hb_006120_010 Hb_006120_010 Hb_000077_450--Hb_006120_010 Hb_000967_010 Hb_000967_010 Hb_000077_450--Hb_000967_010 Hb_010571_010 Hb_010571_010 Hb_000077_450--Hb_010571_010 Hb_003058_180 Hb_003058_180 Hb_000077_450--Hb_003058_180 Hb_081282_010--Hb_001596_030 Hb_081282_010--Hb_003090_230 Hb_161346_010 Hb_161346_010 Hb_081282_010--Hb_161346_010 Hb_000676_380 Hb_000676_380 Hb_081282_010--Hb_000676_380 Hb_000540_030 Hb_000540_030 Hb_081282_010--Hb_000540_030 Hb_000306_050 Hb_000306_050 Hb_001596_030--Hb_000306_050 Hb_001242_020 Hb_001242_020 Hb_001596_030--Hb_001242_020 Hb_001596_030--Hb_000540_030 Hb_020805_110 Hb_020805_110 Hb_001596_030--Hb_020805_110 Hb_011452_020--Hb_000967_010 Hb_011452_020--Hb_006120_010 Hb_008727_030 Hb_008727_030 Hb_011452_020--Hb_008727_030 Hb_003435_070 Hb_003435_070 Hb_011452_020--Hb_003435_070 Hb_007181_080--Hb_010571_010 Hb_002499_020 Hb_002499_020 Hb_007181_080--Hb_002499_020 Hb_046191_010 Hb_046191_010 Hb_007181_080--Hb_046191_010 Hb_007181_080--Hb_006120_010 Hb_000099_020 Hb_000099_020 Hb_007181_080--Hb_000099_020 Hb_003090_230--Hb_000676_380 Hb_003090_230--Hb_020805_110 Hb_009711_040 Hb_009711_040 Hb_003090_230--Hb_009711_040 Hb_004875_040 Hb_004875_040 Hb_003090_230--Hb_004875_040 Hb_003090_230--Hb_001596_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.446896 0.204653 3.60564 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0362888 0 6.70127 0.0746235

CAGE analysis