Hb_021419_020

Information

Type -
Description -
Location Contig21419: 15273-17055
Sequence    

Annotation

kegg
ID vvi:100257471
description 60S ribosomal protein L13-1
nr
ID XP_012090947.1
description PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
swissprot
ID P41129
description 60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1
trembl
ID A0A067JD82
description 60S ribosomal protein L13 OS=Jatropha curcas GN=JCGZ_00588 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l13-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22138: 14725-17087 , PASA_asmbl_22139: 14944-15165
cDNA
(Sanger)
(ID:Location)		 026_M13.ab1: 14725-16388 , 027_J17.ab1: 14725-16794

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021419_020 0.0 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
2 Hb_002811_260 0.066370362 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
3 Hb_004787_060 0.0677127116 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
4 Hb_001504_020 0.0686878043 - - 40S ribosomal protein S12A [Hevea brasiliensis]
5 Hb_002112_020 0.0701865502 - - 60S ribosomal protein L9, putative [Ricinus communis]
6 Hb_000286_070 0.0812858906 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
7 Hb_003292_040 0.0828791024 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
8 Hb_004116_060 0.0836541066 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
9 Hb_002868_010 0.0840022673 - - 60S ribosomal protein L30, putative [Ricinus communis]
10 Hb_000012_220 0.0856640073 - - conserved hypothetical protein [Ricinus communis]
11 Hb_175215_010 0.0865561662 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
12 Hb_004096_090 0.0872353013 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
13 Hb_000260_550 0.0878373738 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
14 Hb_005322_040 0.0893383531 - - 60S ribosomal protein L9, putative [Ricinus communis]
15 Hb_011224_060 0.0895226019 - - hypothetical protein POPTR_0011s16880g [Populus trichocarpa]
16 Hb_001564_130 0.0896793043 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_001329_290 0.0897428733 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
18 Hb_005045_060 0.0903007488 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
19 Hb_011970_030 0.0915406901 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
20 Hb_001534_120 0.0925603231 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]

Gene co-expression network

sample Hb_021419_020 Hb_021419_020 Hb_002811_260 Hb_002811_260 Hb_021419_020--Hb_002811_260 Hb_004787_060 Hb_004787_060 Hb_021419_020--Hb_004787_060 Hb_001504_020 Hb_001504_020 Hb_021419_020--Hb_001504_020 Hb_002112_020 Hb_002112_020 Hb_021419_020--Hb_002112_020 Hb_000286_070 Hb_000286_070 Hb_021419_020--Hb_000286_070 Hb_003292_040 Hb_003292_040 Hb_021419_020--Hb_003292_040 Hb_128048_010 Hb_128048_010 Hb_002811_260--Hb_128048_010 Hb_005773_060 Hb_005773_060 Hb_002811_260--Hb_005773_060 Hb_001195_480 Hb_001195_480 Hb_002811_260--Hb_001195_480 Hb_005045_060 Hb_005045_060 Hb_002811_260--Hb_005045_060 Hb_001328_040 Hb_001328_040 Hb_002811_260--Hb_001328_040 Hb_005322_040 Hb_005322_040 Hb_004787_060--Hb_005322_040 Hb_001329_290 Hb_001329_290 Hb_004787_060--Hb_001329_290 Hb_004787_060--Hb_000286_070 Hb_004449_170 Hb_004449_170 Hb_004787_060--Hb_004449_170 Hb_010921_010 Hb_010921_010 Hb_004787_060--Hb_010921_010 Hb_001504_020--Hb_002112_020 Hb_027472_040 Hb_027472_040 Hb_001504_020--Hb_027472_040 Hb_002234_140 Hb_002234_140 Hb_001504_020--Hb_002234_140 Hb_001504_020--Hb_010921_010 Hb_175215_010 Hb_175215_010 Hb_001504_020--Hb_175215_010 Hb_002112_020--Hb_010921_010 Hb_002660_080 Hb_002660_080 Hb_002112_020--Hb_002660_080 Hb_002112_020--Hb_128048_010 Hb_002112_020--Hb_175215_010 Hb_000286_070--Hb_001329_290 Hb_000009_530 Hb_000009_530 Hb_000286_070--Hb_000009_530 Hb_001534_120 Hb_001534_120 Hb_000286_070--Hb_001534_120 Hb_000286_070--Hb_003292_040 Hb_003935_020 Hb_003935_020 Hb_000286_070--Hb_003935_020 Hb_001564_130 Hb_001564_130 Hb_003292_040--Hb_001564_130 Hb_011970_030 Hb_011970_030 Hb_003292_040--Hb_011970_030 Hb_000670_020 Hb_000670_020 Hb_003292_040--Hb_000670_020 Hb_000610_010 Hb_000610_010 Hb_003292_040--Hb_000610_010 Hb_003687_230 Hb_003687_230 Hb_003292_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003292_040--Hb_002233_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
201.437 115.405 211.108 140.043 204.322 228.248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
204.774 431.83 122.015 102.396 57.5537

CAGE analysis