Hb_021419_030

Information

Type -
Description -
Location Contig21419: 17990-21245
Sequence    

Annotation

kegg
ID gmx:100816173
description uncharacterized LOC100816173
nr
ID KHN11231.1
description hypothetical protein glysoja_023295 [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A078BVX7
description BnaA07g23620D protein OS=Brassica napus GN=BnaA07g23620D PE=4 SV=1
Gene Ontology
ID GO:0016021
description BnaA07g23620D

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22138: 14725-17087 , PASA_asmbl_22140: 17960-21331 , PASA_asmbl_22141: 20155-20621
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021419_030 0.0 - - hypothetical protein glysoja_023295 [Glycine soja]
2 Hb_001408_140 0.0580547027 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
3 Hb_000915_180 0.061878701 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
4 Hb_123915_040 0.0627646607 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
5 Hb_000905_110 0.0650065443 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
6 Hb_000340_530 0.067800785 - - hypothetical protein VITISV_016664 [Vitis vinifera]
7 Hb_000336_210 0.0687945675 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
8 Hb_000116_450 0.07019655 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
9 Hb_000522_170 0.0712318246 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
10 Hb_013399_020 0.0712910033 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
11 Hb_001511_060 0.0713626855 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
12 Hb_010381_090 0.0723058218 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
13 Hb_002849_130 0.0728186997 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
14 Hb_000359_040 0.0729209823 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000029_300 0.0730062879 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
16 Hb_001009_320 0.073419263 - - PREDICTED: uncharacterized protein LOC105640250 [Jatropha curcas]
17 Hb_014834_150 0.074220761 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_093458_040 0.0745446897 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
19 Hb_000006_010 0.0748678203 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003938_090 0.0757128755 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_021419_030 Hb_021419_030 Hb_001408_140 Hb_001408_140 Hb_021419_030--Hb_001408_140 Hb_000915_180 Hb_000915_180 Hb_021419_030--Hb_000915_180 Hb_123915_040 Hb_123915_040 Hb_021419_030--Hb_123915_040 Hb_000905_110 Hb_000905_110 Hb_021419_030--Hb_000905_110 Hb_000340_530 Hb_000340_530 Hb_021419_030--Hb_000340_530 Hb_000336_210 Hb_000336_210 Hb_021419_030--Hb_000336_210 Hb_105105_010 Hb_105105_010 Hb_001408_140--Hb_105105_010 Hb_001195_530 Hb_001195_530 Hb_001408_140--Hb_001195_530 Hb_003464_090 Hb_003464_090 Hb_001408_140--Hb_003464_090 Hb_093458_040 Hb_093458_040 Hb_001408_140--Hb_093458_040 Hb_001408_140--Hb_000340_530 Hb_013358_040 Hb_013358_040 Hb_000915_180--Hb_013358_040 Hb_000915_180--Hb_001195_530 Hb_000069_310 Hb_000069_310 Hb_000915_180--Hb_000069_310 Hb_000915_180--Hb_001408_140 Hb_000331_680 Hb_000331_680 Hb_000915_180--Hb_000331_680 Hb_000417_130 Hb_000417_130 Hb_123915_040--Hb_000417_130 Hb_000317_470 Hb_000317_470 Hb_123915_040--Hb_000317_470 Hb_004254_090 Hb_004254_090 Hb_123915_040--Hb_004254_090 Hb_001357_250 Hb_001357_250 Hb_123915_040--Hb_001357_250 Hb_123915_040--Hb_000905_110 Hb_001021_150 Hb_001021_150 Hb_123915_040--Hb_001021_150 Hb_000905_110--Hb_000336_210 Hb_008847_030 Hb_008847_030 Hb_000905_110--Hb_008847_030 Hb_000905_110--Hb_001021_150 Hb_014834_150 Hb_014834_150 Hb_000905_110--Hb_014834_150 Hb_002989_020 Hb_002989_020 Hb_000340_530--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_000340_530--Hb_011063_050 Hb_000340_530--Hb_093458_040 Hb_001679_050 Hb_001679_050 Hb_000340_530--Hb_001679_050 Hb_000116_450 Hb_000116_450 Hb_000340_530--Hb_000116_450 Hb_004109_080 Hb_004109_080 Hb_000340_530--Hb_004109_080 Hb_000875_080 Hb_000875_080 Hb_000336_210--Hb_000875_080 Hb_000336_210--Hb_014834_150 Hb_002272_050 Hb_002272_050 Hb_000336_210--Hb_002272_050 Hb_171900_090 Hb_171900_090 Hb_000336_210--Hb_171900_090 Hb_000297_160 Hb_000297_160 Hb_000336_210--Hb_000297_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3071 12.8058 14.7912 15.2506 17.2261 10.9068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1423 14.777 12.8289 11.9459 11.1805

CAGE analysis