Hb_021419_050

Information

Type -
Description -
Location Contig21419: 24343-39612
Sequence    

Annotation

kegg
ID mdm:103412596
description putative receptor-like protein kinase At3g47110
nr
ID XP_008349363.1
description PREDICTED: putative receptor-like protein kinase At3g47110 [Malus domestica]
swissprot
ID C0LGF4
description LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1
trembl
ID M5VU35
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020656mg PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021419_050 0.0 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Malus domestica]
2 Hb_003025_070 0.1583749876 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
3 Hb_008835_010 0.2194606308 - - PREDICTED: uncharacterized protein LOC105851721 [Cicer arietinum]
4 Hb_150851_010 0.2203472369 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_012399_010 0.2210998892 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000061_280 0.2658165489 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
7 Hb_004680_030 0.2669054658 - - PREDICTED: uncharacterized protein LOC105795864 [Gossypium raimondii]
8 Hb_108886_010 0.2796561376 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000252_030 0.2904070284 - - Heme-binding protein, putative [Ricinus communis]
10 Hb_000042_140 0.2979743997 - - hypothetical protein POPTR_0001s41640g, partial [Populus trichocarpa]
11 Hb_001545_190 0.3101597047 - - hypothetical protein VITISV_012031 [Vitis vinifera]
12 Hb_000211_060 0.3312722373 - - glutathione peroxidase [Populus euphratica]
13 Hb_000661_190 0.333575832 - - PREDICTED: protein spt2-like [Jatropha curcas]
14 Hb_007768_030 0.3446459864 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_000120_690 0.3453272201 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
16 Hb_009474_010 0.3472045601 - - -
17 Hb_000204_200 0.3548060344 - - hypothetical protein VITISV_019818 [Vitis vinifera]
18 Hb_030630_010 0.3563850618 - - PREDICTED: uncharacterized protein LOC105786776 [Gossypium raimondii]
19 Hb_021156_030 0.3583458622 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
20 Hb_001338_060 0.360220952 - - -

Gene co-expression network

sample Hb_021419_050 Hb_021419_050 Hb_003025_070 Hb_003025_070 Hb_021419_050--Hb_003025_070 Hb_008835_010 Hb_008835_010 Hb_021419_050--Hb_008835_010 Hb_150851_010 Hb_150851_010 Hb_021419_050--Hb_150851_010 Hb_012399_010 Hb_012399_010 Hb_021419_050--Hb_012399_010 Hb_000061_280 Hb_000061_280 Hb_021419_050--Hb_000061_280 Hb_004680_030 Hb_004680_030 Hb_021419_050--Hb_004680_030 Hb_003025_070--Hb_012399_010 Hb_003025_070--Hb_008835_010 Hb_003025_070--Hb_150851_010 Hb_003025_070--Hb_004680_030 Hb_108886_010 Hb_108886_010 Hb_003025_070--Hb_108886_010 Hb_008835_010--Hb_150851_010 Hb_008835_010--Hb_012399_010 Hb_008835_010--Hb_000061_280 Hb_008835_010--Hb_004680_030 Hb_001545_190 Hb_001545_190 Hb_008835_010--Hb_001545_190 Hb_150851_010--Hb_012399_010 Hb_150851_010--Hb_000061_280 Hb_150851_010--Hb_004680_030 Hb_150851_010--Hb_001545_190 Hb_012399_010--Hb_004680_030 Hb_012399_010--Hb_000061_280 Hb_000061_280--Hb_001545_190 Hb_000061_280--Hb_003025_070 Hb_000038_190 Hb_000038_190 Hb_004680_030--Hb_000038_190 Hb_000046_150 Hb_000046_150 Hb_004680_030--Hb_000046_150 Hb_000047_120 Hb_000047_120 Hb_004680_030--Hb_000047_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00781391 0 0 0 0.00358182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0271605 0 0

CAGE analysis