Hb_021422_010

Information

Type -
Description -
Location Contig21422: 10034-14506
Sequence    

Annotation

kegg
ID pop:POPTR_0007s06190g
description POPTRDRAFT_1082658; alanine:glyoxylate aminotransferase 2 family protein
nr
ID XP_012075189.1
description PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
swissprot
ID Q940M2
description Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=AGT2 PE=2 SV=1
trembl
ID A0A067KSJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09369 PE=3 SV=1
Gene Ontology
ID GO:0005774
description alanine--glyoxylate aminotransferase 2 homolog mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22142: 10248-14244 , PASA_asmbl_22143: 10241-14328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021422_010 0.0 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
2 Hb_006623_020 0.0581806789 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
3 Hb_003018_060 0.0589897647 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
4 Hb_000032_490 0.0630996411 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
5 Hb_001828_160 0.0654152024 - - hypothetical protein F775_31105 [Aegilops tauschii]
6 Hb_000808_250 0.0684656565 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
7 Hb_006960_050 0.0692913416 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
8 Hb_000640_220 0.0703213517 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
9 Hb_000368_020 0.0754354435 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
10 Hb_001545_200 0.075723412 - - PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]
11 Hb_001541_260 0.0785461856 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
12 Hb_000104_080 0.078786645 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
13 Hb_000923_040 0.0788128777 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
14 Hb_003994_200 0.0789380997 - - PREDICTED: uncharacterized protein LOC105646142 [Jatropha curcas]
15 Hb_002367_130 0.0815468793 - - UNC-50 family protein isoform 1 [Theobroma cacao]
16 Hb_004976_020 0.08199813 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
17 Hb_000794_050 0.0822729552 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
18 Hb_178968_100 0.0834126891 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
19 Hb_106552_050 0.0838563548 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
20 Hb_002157_260 0.0847654749 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]

Gene co-expression network

sample Hb_021422_010 Hb_021422_010 Hb_006623_020 Hb_006623_020 Hb_021422_010--Hb_006623_020 Hb_003018_060 Hb_003018_060 Hb_021422_010--Hb_003018_060 Hb_000032_490 Hb_000032_490 Hb_021422_010--Hb_000032_490 Hb_001828_160 Hb_001828_160 Hb_021422_010--Hb_001828_160 Hb_000808_250 Hb_000808_250 Hb_021422_010--Hb_000808_250 Hb_006960_050 Hb_006960_050 Hb_021422_010--Hb_006960_050 Hb_006623_020--Hb_000808_250 Hb_000617_220 Hb_000617_220 Hb_006623_020--Hb_000617_220 Hb_006623_020--Hb_003018_060 Hb_000920_280 Hb_000920_280 Hb_006623_020--Hb_000920_280 Hb_003091_010 Hb_003091_010 Hb_006623_020--Hb_003091_010 Hb_003018_060--Hb_006960_050 Hb_106552_050 Hb_106552_050 Hb_003018_060--Hb_106552_050 Hb_000640_220 Hb_000640_220 Hb_003018_060--Hb_000640_220 Hb_006620_020 Hb_006620_020 Hb_003018_060--Hb_006620_020 Hb_002351_020 Hb_002351_020 Hb_000032_490--Hb_002351_020 Hb_000946_120 Hb_000946_120 Hb_000032_490--Hb_000946_120 Hb_000832_090 Hb_000832_090 Hb_000032_490--Hb_000832_090 Hb_001541_260 Hb_001541_260 Hb_000032_490--Hb_001541_260 Hb_000365_140 Hb_000365_140 Hb_000032_490--Hb_000365_140 Hb_000207_310 Hb_000207_310 Hb_001828_160--Hb_000207_310 Hb_000913_050 Hb_000913_050 Hb_001828_160--Hb_000913_050 Hb_001828_160--Hb_006620_020 Hb_000116_180 Hb_000116_180 Hb_001828_160--Hb_000116_180 Hb_001545_200 Hb_001545_200 Hb_001828_160--Hb_001545_200 Hb_003849_060 Hb_003849_060 Hb_000808_250--Hb_003849_060 Hb_000359_330 Hb_000359_330 Hb_000808_250--Hb_000359_330 Hb_178968_100 Hb_178968_100 Hb_000808_250--Hb_178968_100 Hb_000808_250--Hb_106552_050 Hb_000649_070 Hb_000649_070 Hb_006960_050--Hb_000649_070 Hb_004055_150 Hb_004055_150 Hb_006960_050--Hb_004055_150 Hb_004785_100 Hb_004785_100 Hb_006960_050--Hb_004785_100 Hb_006960_050--Hb_006620_020 Hb_020367_050 Hb_020367_050 Hb_006960_050--Hb_020367_050 Hb_002686_250 Hb_002686_250 Hb_006960_050--Hb_002686_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
107.995 53.7494 64.912 35.4379 132.873 86.5032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.2774 59.7545 39.7251 36.0732 40.3392

CAGE analysis