Hb_021443_030

Information

Type -
Description -
Location Contig21443: 22638-23760
Sequence    

Annotation

kegg
ID pop:POPTR_0015s14290g
description POPTRDRAFT_575707; hydroxyproline-rich glycoprotein
nr
ID XP_012090383.1
description PREDICTED: uncharacterized protein LOC105648566 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JS57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021443_030 0.0 - - PREDICTED: uncharacterized protein LOC105648566 [Jatropha curcas]
2 Hb_089114_010 0.1755201073 - - PREDICTED: uncharacterized protein LOC105646926 [Jatropha curcas]
3 Hb_002965_070 0.1973034086 - - PREDICTED: extensin [Jatropha curcas]
4 Hb_000680_180 0.1980302488 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
5 Hb_003549_130 0.1980395361 - - neutral/alkaline invertase [Manihot esculenta]
6 Hb_001894_160 0.2010444226 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000563_510 0.201172118 - - epoxide hydrolase, putative [Ricinus communis]
8 Hb_000928_250 0.2071492408 - - calcium ion binding protein, putative [Ricinus communis]
9 Hb_000317_190 0.2079292816 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
10 Hb_000622_210 0.2082449922 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
11 Hb_161901_020 0.2088412923 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
12 Hb_033930_010 0.209242573 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
13 Hb_008173_130 0.2094120233 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
14 Hb_001007_090 0.2099246394 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
15 Hb_000866_430 0.2112122764 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
16 Hb_003058_030 0.2124038785 - - calcium-dependent protein kinase, putative [Ricinus communis]
17 Hb_000185_230 0.2125125435 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_015026_020 0.2128984364 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
19 Hb_002997_110 0.2134123102 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
20 Hb_002960_100 0.2139855473 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]

Gene co-expression network

sample Hb_021443_030 Hb_021443_030 Hb_089114_010 Hb_089114_010 Hb_021443_030--Hb_089114_010 Hb_002965_070 Hb_002965_070 Hb_021443_030--Hb_002965_070 Hb_000680_180 Hb_000680_180 Hb_021443_030--Hb_000680_180 Hb_003549_130 Hb_003549_130 Hb_021443_030--Hb_003549_130 Hb_001894_160 Hb_001894_160 Hb_021443_030--Hb_001894_160 Hb_000563_510 Hb_000563_510 Hb_021443_030--Hb_000563_510 Hb_089114_010--Hb_002965_070 Hb_061908_030 Hb_061908_030 Hb_089114_010--Hb_061908_030 Hb_033930_010 Hb_033930_010 Hb_089114_010--Hb_033930_010 Hb_047442_010 Hb_047442_010 Hb_089114_010--Hb_047442_010 Hb_000317_190 Hb_000317_190 Hb_089114_010--Hb_000317_190 Hb_089114_010--Hb_001894_160 Hb_002965_070--Hb_047442_010 Hb_002965_070--Hb_000317_190 Hb_002965_070--Hb_000563_510 Hb_000308_010 Hb_000308_010 Hb_002965_070--Hb_000308_010 Hb_002965_070--Hb_033930_010 Hb_011930_120 Hb_011930_120 Hb_000680_180--Hb_011930_120 Hb_010126_030 Hb_010126_030 Hb_000680_180--Hb_010126_030 Hb_002007_070 Hb_002007_070 Hb_000680_180--Hb_002007_070 Hb_000283_100 Hb_000283_100 Hb_000680_180--Hb_000283_100 Hb_001989_060 Hb_001989_060 Hb_000680_180--Hb_001989_060 Hb_001579_070 Hb_001579_070 Hb_000680_180--Hb_001579_070 Hb_003106_200 Hb_003106_200 Hb_003549_130--Hb_003106_200 Hb_001198_080 Hb_001198_080 Hb_003549_130--Hb_001198_080 Hb_015026_020 Hb_015026_020 Hb_003549_130--Hb_015026_020 Hb_003430_040 Hb_003430_040 Hb_003549_130--Hb_003430_040 Hb_000032_200 Hb_000032_200 Hb_003549_130--Hb_000032_200 Hb_000818_120 Hb_000818_120 Hb_003549_130--Hb_000818_120 Hb_011671_110 Hb_011671_110 Hb_001894_160--Hb_011671_110 Hb_005941_020 Hb_005941_020 Hb_001894_160--Hb_005941_020 Hb_001894_160--Hb_033930_010 Hb_000928_250 Hb_000928_250 Hb_001894_160--Hb_000928_250 Hb_001894_160--Hb_015026_020 Hb_000622_210 Hb_000622_210 Hb_001894_160--Hb_000622_210 Hb_002960_100 Hb_002960_100 Hb_000563_510--Hb_002960_100 Hb_006694_030 Hb_006694_030 Hb_000563_510--Hb_006694_030 Hb_000563_510--Hb_089114_010 Hb_004837_200 Hb_004837_200 Hb_000563_510--Hb_004837_200 Hb_086614_010 Hb_086614_010 Hb_000563_510--Hb_086614_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0538401 0.816894 1.54498 0.139646 0.0775148 0.023774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0618447 0.0486325 0.088483 0.0196417 0.294726

CAGE analysis