Hb_021443_050

Information

Type -
Description -
Location Contig21443: 30200-35142
Sequence    

Annotation

kegg
ID rcu:RCOM_1498770
description hypothetical protein
nr
ID XP_002510898.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I2H7
description Protein TPX2 OS=Arabidopsis thaliana GN=TPX2 PE=1 SV=1
trembl
ID B9R9M3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1498770 PE=4 SV=1
Gene Ontology
ID GO:0015630
description protein tpx2-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22147: 34927-35421
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021443_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004864_010 0.1349452001 - - hypothetical protein CICLE_v10003960mg, partial [Citrus clementina]
3 Hb_000191_100 0.1506066607 - - cytochrome P450, putative [Ricinus communis]
4 Hb_016637_020 0.153768576 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
5 Hb_007205_020 0.1582192066 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
6 Hb_170878_050 0.1628897328 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
7 Hb_003517_100 0.1654893529 transcription factor TF Family: GRAS -
8 Hb_029866_110 0.1664888164 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
9 Hb_001819_010 0.1672331576 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
10 Hb_001565_010 0.1677948518 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
11 Hb_127661_010 0.1720605601 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_031201_010 0.1721983769 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
13 Hb_000856_130 0.1724525129 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
14 Hb_000575_090 0.1735866321 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Populus euphratica]
15 Hb_005496_170 0.1749131951 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
16 Hb_004627_020 0.1750739543 - - Protein MLO, putative [Ricinus communis]
17 Hb_003494_180 0.1796586216 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
18 Hb_119327_010 0.1797332787 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
19 Hb_001660_050 0.1828057821 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Eucalyptus grandis]
20 Hb_000261_370 0.1828824267 - - -

Gene co-expression network

sample Hb_021443_050 Hb_021443_050 Hb_004864_010 Hb_004864_010 Hb_021443_050--Hb_004864_010 Hb_000191_100 Hb_000191_100 Hb_021443_050--Hb_000191_100 Hb_016637_020 Hb_016637_020 Hb_021443_050--Hb_016637_020 Hb_007205_020 Hb_007205_020 Hb_021443_050--Hb_007205_020 Hb_170878_050 Hb_170878_050 Hb_021443_050--Hb_170878_050 Hb_003517_100 Hb_003517_100 Hb_021443_050--Hb_003517_100 Hb_007035_010 Hb_007035_010 Hb_004864_010--Hb_007035_010 Hb_031201_010 Hb_031201_010 Hb_004864_010--Hb_031201_010 Hb_001866_100 Hb_001866_100 Hb_004864_010--Hb_001866_100 Hb_000856_130 Hb_000856_130 Hb_004864_010--Hb_000856_130 Hb_004864_010--Hb_007205_020 Hb_000191_100--Hb_016637_020 Hb_031862_200 Hb_031862_200 Hb_000191_100--Hb_031862_200 Hb_001819_010 Hb_001819_010 Hb_000191_100--Hb_001819_010 Hb_029866_110 Hb_029866_110 Hb_000191_100--Hb_029866_110 Hb_000191_100--Hb_007205_020 Hb_123560_050 Hb_123560_050 Hb_000191_100--Hb_123560_050 Hb_127661_010 Hb_127661_010 Hb_016637_020--Hb_127661_010 Hb_003494_180 Hb_003494_180 Hb_016637_020--Hb_003494_180 Hb_016637_020--Hb_007205_020 Hb_016637_020--Hb_170878_050 Hb_016637_020--Hb_029866_110 Hb_007205_020--Hb_031201_010 Hb_002845_020 Hb_002845_020 Hb_007205_020--Hb_002845_020 Hb_007205_020--Hb_003494_180 Hb_007205_020--Hb_001866_100 Hb_005496_170 Hb_005496_170 Hb_007205_020--Hb_005496_170 Hb_001660_050 Hb_001660_050 Hb_170878_050--Hb_001660_050 Hb_170878_050--Hb_029866_110 Hb_009659_040 Hb_009659_040 Hb_170878_050--Hb_009659_040 Hb_170878_050--Hb_001819_010 Hb_001634_080 Hb_001634_080 Hb_170878_050--Hb_001634_080 Hb_001268_300 Hb_001268_300 Hb_003517_100--Hb_001268_300 Hb_000522_010 Hb_000522_010 Hb_003517_100--Hb_000522_010 Hb_002888_040 Hb_002888_040 Hb_003517_100--Hb_002888_040 Hb_000365_220 Hb_000365_220 Hb_003517_100--Hb_000365_220 Hb_000417_410 Hb_000417_410 Hb_003517_100--Hb_000417_410 Hb_008494_090 Hb_008494_090 Hb_003517_100--Hb_008494_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.12354 0.0992148 0.0506117 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0290478 0 0.1743 0.181108

CAGE analysis