Hb_021443_060

Information

Type -
Description -
Location Contig21443: 34912-40864
Sequence    

Annotation

kegg
ID rcu:RCOM_1498760
description erecta, putative (EC:2.7.12.2 3.1.3.16)
nr
ID XP_002322426.1
description PTH-1 family protein [Populus trichocarpa]
swissprot
ID C0LGW6
description LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=1 SV=1
trembl
ID B9ICX7
description PTH-1 family protein OS=Populus trichocarpa GN=POPTR_0015s14270g PE=3 SV=1
Gene Ontology
ID GO:0005576
description lrr receptor-like serine threonine-protein kinase erl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22148: 37581-37975 , PASA_asmbl_22149: 39345-40993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021443_060 0.0 - - PTH-1 family protein [Populus trichocarpa]
2 Hb_092516_010 0.0745532194 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
3 Hb_000313_250 0.0836552346 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
4 Hb_174899_010 0.0852954181 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
5 Hb_027684_010 0.0873354214 - - hypothetical protein RCOM_0504250 [Ricinus communis]
6 Hb_000358_160 0.0885876444 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
7 Hb_023582_010 0.096057978 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001266_010 0.0969086921 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
9 Hb_000282_020 0.0975577969 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
10 Hb_001148_110 0.0991910263 - - -
11 Hb_019053_040 0.1000610416 - - cytochrome P450, putative [Ricinus communis]
12 Hb_000005_060 0.1006486445 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
13 Hb_015044_010 0.1018672713 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
14 Hb_007545_070 0.1023087241 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
15 Hb_000722_030 0.1026867207 - - putative plant disease resistance family protein [Populus trichocarpa]
16 Hb_002042_180 0.1030996079 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
17 Hb_023827_030 0.1039264184 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]
18 Hb_001655_080 0.1050630757 - - Purple acid phosphatase precursor, putative [Ricinus communis]
19 Hb_001014_240 0.1063590402 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
20 Hb_000962_090 0.1066692589 - - omega-6 fatty acid desaturase [Hevea brasiliensis]

Gene co-expression network

sample Hb_021443_060 Hb_021443_060 Hb_092516_010 Hb_092516_010 Hb_021443_060--Hb_092516_010 Hb_000313_250 Hb_000313_250 Hb_021443_060--Hb_000313_250 Hb_174899_010 Hb_174899_010 Hb_021443_060--Hb_174899_010 Hb_027684_010 Hb_027684_010 Hb_021443_060--Hb_027684_010 Hb_000358_160 Hb_000358_160 Hb_021443_060--Hb_000358_160 Hb_023582_010 Hb_023582_010 Hb_021443_060--Hb_023582_010 Hb_092516_010--Hb_000358_160 Hb_000294_020 Hb_000294_020 Hb_092516_010--Hb_000294_020 Hb_110266_010 Hb_110266_010 Hb_092516_010--Hb_110266_010 Hb_092516_010--Hb_000313_250 Hb_001655_080 Hb_001655_080 Hb_092516_010--Hb_001655_080 Hb_000890_170 Hb_000890_170 Hb_000313_250--Hb_000890_170 Hb_000313_250--Hb_110266_010 Hb_002007_120 Hb_002007_120 Hb_000313_250--Hb_002007_120 Hb_000005_060 Hb_000005_060 Hb_000313_250--Hb_000005_060 Hb_007545_070 Hb_007545_070 Hb_174899_010--Hb_007545_070 Hb_006267_040 Hb_006267_040 Hb_174899_010--Hb_006267_040 Hb_003101_020 Hb_003101_020 Hb_174899_010--Hb_003101_020 Hb_002391_030 Hb_002391_030 Hb_174899_010--Hb_002391_030 Hb_000722_030 Hb_000722_030 Hb_174899_010--Hb_000722_030 Hb_027684_010--Hb_000722_030 Hb_027684_010--Hb_001655_080 Hb_002066_100 Hb_002066_100 Hb_027684_010--Hb_002066_100 Hb_002518_040 Hb_002518_040 Hb_027684_010--Hb_002518_040 Hb_027684_010--Hb_000358_160 Hb_000358_160--Hb_001655_080 Hb_000358_160--Hb_000313_250 Hb_000345_400 Hb_000345_400 Hb_000358_160--Hb_000345_400 Hb_019053_040 Hb_019053_040 Hb_023582_010--Hb_019053_040 Hb_023582_010--Hb_000722_030 Hb_000282_020 Hb_000282_020 Hb_023582_010--Hb_000282_020 Hb_016297_010 Hb_016297_010 Hb_023582_010--Hb_016297_010 Hb_023582_010--Hb_000005_060 Hb_105148_020 Hb_105148_020 Hb_023582_010--Hb_105148_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0234803 0.616603 7.96553 2.75861 0.139832 0.00590335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0153259 0 0.0230496 0.325371 5.11559

CAGE analysis