Hb_021443_080

Information

Type -
Description -
Location Contig21443: 49979-52514
Sequence    

Annotation

kegg
ID pop:POPTR_0015s14240g
description POPTRDRAFT_824886; hypothetical protein
nr
ID XP_012090374.1
description PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
swissprot
ID Q9FLI7
description CDGSH iron-sulfur domain-containing protein NEET OS=Arabidopsis thaliana GN=NEET PE=1 SV=1
trembl
ID A0A067JHV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26204 PE=4 SV=1
Gene Ontology
ID GO:0005739
description cdgsh iron-sulfur domain-containing protein neet

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22152: 49134-49336 , PASA_asmbl_22154: 51110-51264
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021443_080 0.0 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
2 Hb_012291_030 0.1133510336 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X3 [Populus euphratica]
3 Hb_001153_020 0.1161309661 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
4 Hb_001775_110 0.1174103694 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
5 Hb_000398_040 0.1199628786 - - Auxin response factor, putative [Ricinus communis]
6 Hb_001314_040 0.122664643 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
7 Hb_168905_010 0.1227405689 - - PREDICTED: AP-1 complex subunit sigma-1 isoform X2 [Cicer arietinum]
8 Hb_001396_100 0.1237927099 - - DNA binding protein, putative [Ricinus communis]
9 Hb_000997_360 0.1240763604 - - hypothetical protein AALP_AAs70636U000100 [Arabis alpina]
10 Hb_000224_140 0.126667039 - - ribonuclease z, chloroplast, putative [Ricinus communis]
11 Hb_001218_040 0.1276715381 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
12 Hb_004156_040 0.128409858 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
13 Hb_009113_070 0.1286295929 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
14 Hb_006569_100 0.1289165066 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
15 Hb_001904_090 0.1294620331 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
16 Hb_000635_210 0.1301629041 - - unknown [Populus trichocarpa]
17 Hb_001519_030 0.133657999 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
18 Hb_027654_050 0.1358880096 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
19 Hb_000125_210 0.135918033 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
20 Hb_000103_010 0.1362367312 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_021443_080 Hb_021443_080 Hb_012291_030 Hb_012291_030 Hb_021443_080--Hb_012291_030 Hb_001153_020 Hb_001153_020 Hb_021443_080--Hb_001153_020 Hb_001775_110 Hb_001775_110 Hb_021443_080--Hb_001775_110 Hb_000398_040 Hb_000398_040 Hb_021443_080--Hb_000398_040 Hb_001314_040 Hb_001314_040 Hb_021443_080--Hb_001314_040 Hb_168905_010 Hb_168905_010 Hb_021443_080--Hb_168905_010 Hb_002600_040 Hb_002600_040 Hb_012291_030--Hb_002600_040 Hb_000622_090 Hb_000622_090 Hb_012291_030--Hb_000622_090 Hb_093458_050 Hb_093458_050 Hb_012291_030--Hb_093458_050 Hb_003783_030 Hb_003783_030 Hb_012291_030--Hb_003783_030 Hb_000108_190 Hb_000108_190 Hb_012291_030--Hb_000108_190 Hb_000635_210 Hb_000635_210 Hb_001153_020--Hb_000635_210 Hb_001153_020--Hb_168905_010 Hb_000200_290 Hb_000200_290 Hb_001153_020--Hb_000200_290 Hb_000997_360 Hb_000997_360 Hb_001153_020--Hb_000997_360 Hb_000125_210 Hb_000125_210 Hb_001153_020--Hb_000125_210 Hb_001775_110--Hb_000398_040 Hb_001083_020 Hb_001083_020 Hb_001775_110--Hb_001083_020 Hb_000046_290 Hb_000046_290 Hb_001775_110--Hb_000046_290 Hb_001360_050 Hb_001360_050 Hb_001775_110--Hb_001360_050 Hb_011909_100 Hb_011909_100 Hb_001775_110--Hb_011909_100 Hb_114336_020 Hb_114336_020 Hb_001775_110--Hb_114336_020 Hb_009113_070 Hb_009113_070 Hb_000398_040--Hb_009113_070 Hb_000841_020 Hb_000841_020 Hb_000398_040--Hb_000841_020 Hb_000398_040--Hb_001083_020 Hb_000398_040--Hb_114336_020 Hb_011534_030 Hb_011534_030 Hb_000398_040--Hb_011534_030 Hb_006569_100 Hb_006569_100 Hb_001314_040--Hb_006569_100 Hb_001157_010 Hb_001157_010 Hb_001314_040--Hb_001157_010 Hb_020419_020 Hb_020419_020 Hb_001314_040--Hb_020419_020 Hb_000802_100 Hb_000802_100 Hb_001314_040--Hb_000802_100 Hb_000224_140 Hb_000224_140 Hb_001314_040--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_001314_040--Hb_068056_030 Hb_001218_040 Hb_001218_040 Hb_168905_010--Hb_001218_040 Hb_011671_390 Hb_011671_390 Hb_168905_010--Hb_011671_390 Hb_168905_010--Hb_000997_360 Hb_001616_030 Hb_001616_030 Hb_168905_010--Hb_001616_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.422957 0.408184 0.991633 0.771469 1.36877 0.816984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.44493 3.51362 3.88318 1.51697 1.2081

CAGE analysis