Hb_021443_100

Information

Type -
Description -
Location Contig21443: 69286-69671
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021443_100 0.0 - - -
2 Hb_003697_030 0.0945946218 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATXR2 isoform X1 [Jatropha curcas]
3 Hb_001268_050 0.0955865579 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
4 Hb_023001_060 0.1006917265 - - PREDICTED: importin-11 [Jatropha curcas]
5 Hb_004920_120 0.1022331563 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000056_260 0.1047461053 - - hypothetical protein CICLE_v10033822mg [Citrus clementina]
7 Hb_003470_090 0.1060437439 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]
8 Hb_021238_050 0.1096901068 - - conserved hypothetical protein [Ricinus communis]
9 Hb_019654_030 0.1122261608 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
10 Hb_001584_190 0.1122920829 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
11 Hb_005490_030 0.1131158249 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
12 Hb_001575_090 0.1134999943 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
13 Hb_010964_040 0.1138551628 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
14 Hb_003777_310 0.1142493525 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000140_280 0.1145388767 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
16 Hb_000318_290 0.1189572463 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
17 Hb_003108_020 0.1197270788 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
18 Hb_003502_090 0.1202006172 - - ATP synthase subunit d, putative [Ricinus communis]
19 Hb_000479_190 0.1208806647 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003092_030 0.1224046103 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_021443_100 Hb_021443_100 Hb_003697_030 Hb_003697_030 Hb_021443_100--Hb_003697_030 Hb_001268_050 Hb_001268_050 Hb_021443_100--Hb_001268_050 Hb_023001_060 Hb_023001_060 Hb_021443_100--Hb_023001_060 Hb_004920_120 Hb_004920_120 Hb_021443_100--Hb_004920_120 Hb_000056_260 Hb_000056_260 Hb_021443_100--Hb_000056_260 Hb_003470_090 Hb_003470_090 Hb_021443_100--Hb_003470_090 Hb_003697_030--Hb_023001_060 Hb_005490_030 Hb_005490_030 Hb_003697_030--Hb_005490_030 Hb_001344_010 Hb_001344_010 Hb_003697_030--Hb_001344_010 Hb_003777_310 Hb_003777_310 Hb_003697_030--Hb_003777_310 Hb_003697_030--Hb_004920_120 Hb_003697_050 Hb_003697_050 Hb_001268_050--Hb_003697_050 Hb_003502_090 Hb_003502_090 Hb_001268_050--Hb_003502_090 Hb_000083_170 Hb_000083_170 Hb_001268_050--Hb_000083_170 Hb_000479_190 Hb_000479_190 Hb_001268_050--Hb_000479_190 Hb_000326_090 Hb_000326_090 Hb_001268_050--Hb_000326_090 Hb_023001_060--Hb_001344_010 Hb_023001_060--Hb_003777_310 Hb_023001_060--Hb_005490_030 Hb_005054_100 Hb_005054_100 Hb_023001_060--Hb_005054_100 Hb_000318_290 Hb_000318_290 Hb_023001_060--Hb_000318_290 Hb_001009_170 Hb_001009_170 Hb_004920_120--Hb_001009_170 Hb_004920_120--Hb_005490_030 Hb_015934_070 Hb_015934_070 Hb_004920_120--Hb_015934_070 Hb_061090_010 Hb_061090_010 Hb_004920_120--Hb_061090_010 Hb_004218_110 Hb_004218_110 Hb_004920_120--Hb_004218_110 Hb_025240_040 Hb_025240_040 Hb_004920_120--Hb_025240_040 Hb_002445_120 Hb_002445_120 Hb_000056_260--Hb_002445_120 Hb_001279_150 Hb_001279_150 Hb_000056_260--Hb_001279_150 Hb_000120_670 Hb_000120_670 Hb_000056_260--Hb_000120_670 Hb_001935_130 Hb_001935_130 Hb_000056_260--Hb_001935_130 Hb_007017_030 Hb_007017_030 Hb_000056_260--Hb_007017_030 Hb_143398_010 Hb_143398_010 Hb_000056_260--Hb_143398_010 Hb_003177_030 Hb_003177_030 Hb_003470_090--Hb_003177_030 Hb_000749_220 Hb_000749_220 Hb_003470_090--Hb_000749_220 Hb_000096_010 Hb_000096_010 Hb_003470_090--Hb_000096_010 Hb_003470_090--Hb_005490_030 Hb_001159_130 Hb_001159_130 Hb_003470_090--Hb_001159_130 Hb_007460_020 Hb_007460_020 Hb_003470_090--Hb_007460_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2614 6.81271 13.7535 37.6868 29.92 44.0729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.4009 36.1095 41.0303 38.6854 14.9654

CAGE analysis