Hb_021470_010

Information

Type -
Description -
Location Contig21470: 15667-22065
Sequence    

Annotation

kegg
ID cam:101498181
description genome polyprotein-like
nr
ID AHC13200.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID V9QEM3
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0005488
description orf i polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021470_010 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_004409_010 0.0040594408 - - -
3 Hb_030449_010 0.0063284333 - - -
4 Hb_141990_060 0.0064223618 - - -
5 Hb_003206_040 0.0073149804 - - Auxin efflux carrier component, putative [Ricinus communis]
6 Hb_180003_010 0.0074050209 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
7 Hb_096257_010 0.0165986929 - - -
8 Hb_000894_050 0.0173436857 - - -
9 Hb_007586_010 0.0704397461 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
10 Hb_123056_010 0.114224897 - - -
11 Hb_001703_100 0.1477293809 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]
12 Hb_002269_010 0.1543697751 - - PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]
13 Hb_011113_020 0.1811377079 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
14 Hb_085922_010 0.1816302795 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_005269_010 0.1852540787 - - -
16 Hb_010531_060 0.2384394213 - - hypothetical protein B456_010G209400, partial [Gossypium raimondii]
17 Hb_000504_250 0.2436451348 - - -
18 Hb_155880_010 0.2485690525 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_178817_010 0.2754481666 - - protease [Gossypium hirsutum]
20 Hb_023024_010 0.2828615183 - - PREDICTED: uncharacterized protein LOC105767094 [Gossypium raimondii]

Gene co-expression network

sample Hb_021470_010 Hb_021470_010 Hb_004409_010 Hb_004409_010 Hb_021470_010--Hb_004409_010 Hb_030449_010 Hb_030449_010 Hb_021470_010--Hb_030449_010 Hb_141990_060 Hb_141990_060 Hb_021470_010--Hb_141990_060 Hb_003206_040 Hb_003206_040 Hb_021470_010--Hb_003206_040 Hb_180003_010 Hb_180003_010 Hb_021470_010--Hb_180003_010 Hb_096257_010 Hb_096257_010 Hb_021470_010--Hb_096257_010 Hb_004409_010--Hb_141990_060 Hb_004409_010--Hb_003206_040 Hb_004409_010--Hb_030449_010 Hb_004409_010--Hb_180003_010 Hb_004409_010--Hb_096257_010 Hb_030449_010--Hb_180003_010 Hb_030449_010--Hb_096257_010 Hb_000894_050 Hb_000894_050 Hb_030449_010--Hb_000894_050 Hb_030449_010--Hb_141990_060 Hb_141990_060--Hb_003206_040 Hb_141990_060--Hb_180003_010 Hb_141990_060--Hb_096257_010 Hb_003206_040--Hb_030449_010 Hb_003206_040--Hb_180003_010 Hb_003206_040--Hb_096257_010 Hb_180003_010--Hb_096257_010 Hb_180003_010--Hb_000894_050 Hb_096257_010--Hb_000894_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0141942 0.0117556 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis