Hb_021485_010

Information

Type -
Description -
Location Contig21485: 12-849
Sequence    

Annotation

kegg
ID tcc:TCM_035077
description Integrase-type DNA-binding superfamily protein, putative
nr
ID XP_007019013.1
description Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao]
swissprot
ID Q9SFE4
description Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1
trembl
ID A0A061FH68
description Integrase-type DNA-binding superfamily protein, putative OS=Theobroma cacao GN=TCM_035077 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ap2 domain-containing transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021485_010 0.0 - - Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao]
2 Hb_008289_020 0.0005334293 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
3 Hb_004961_010 0.0015080955 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
4 Hb_012753_100 0.0104891809 - - conserved hypothetical protein [Ricinus communis]
5 Hb_015183_050 0.011383165 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
6 Hb_081065_010 0.0175553041 - - hypothetical protein PHAVU_001G084100g, partial [Phaseolus vulgaris]
7 Hb_085910_010 0.022360299 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
8 Hb_005366_030 0.0315904164 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
9 Hb_019135_030 0.0332241306 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
10 Hb_081287_010 0.0347522892 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]
11 Hb_110587_010 0.0377975891 - - unnamed protein product [Coffea canephora]
12 Hb_135513_010 0.0413058946 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_000172_020 0.0514126761 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
14 Hb_010028_010 0.0539416973 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
15 Hb_005096_020 0.0542251278 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
16 Hb_007235_040 0.0573259895 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_006856_060 0.0633817535 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
18 Hb_126916_010 0.0665427997 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
19 Hb_000302_050 0.0671624009 - - -
20 Hb_011045_020 0.068299049 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_021485_010 Hb_021485_010 Hb_008289_020 Hb_008289_020 Hb_021485_010--Hb_008289_020 Hb_004961_010 Hb_004961_010 Hb_021485_010--Hb_004961_010 Hb_012753_100 Hb_012753_100 Hb_021485_010--Hb_012753_100 Hb_015183_050 Hb_015183_050 Hb_021485_010--Hb_015183_050 Hb_081065_010 Hb_081065_010 Hb_021485_010--Hb_081065_010 Hb_085910_010 Hb_085910_010 Hb_021485_010--Hb_085910_010 Hb_008289_020--Hb_004961_010 Hb_008289_020--Hb_015183_050 Hb_008289_020--Hb_012753_100 Hb_008289_020--Hb_081065_010 Hb_008289_020--Hb_085910_010 Hb_004961_010--Hb_015183_050 Hb_004961_010--Hb_012753_100 Hb_004961_010--Hb_081065_010 Hb_004961_010--Hb_085910_010 Hb_012753_100--Hb_085910_010 Hb_012753_100--Hb_015183_050 Hb_012753_100--Hb_081065_010 Hb_015183_050--Hb_081065_010 Hb_005366_030 Hb_005366_030 Hb_015183_050--Hb_005366_030 Hb_019135_030 Hb_019135_030 Hb_015183_050--Hb_019135_030 Hb_081065_010--Hb_005366_030 Hb_081065_010--Hb_019135_030 Hb_081287_010 Hb_081287_010 Hb_081065_010--Hb_081287_010 Hb_010028_010 Hb_010028_010 Hb_085910_010--Hb_010028_010 Hb_085910_010--Hb_015183_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.405442 0 0.246573 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis