Hb_021510_010

Information

Type -
Description -
Location Contig21510: 47157-54362
Sequence    

Annotation

kegg
ID pop:POPTR_0009s15000g
description POPTRDRAFT_821038; hypothetical protein
nr
ID XP_012081765.1
description PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
swissprot
ID B0G107
description Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog OS=Dictyostelium discoideum GN=DDB_G0272484 PE=3 SV=1
trembl
ID A0A067LLU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09613 PE=4 SV=1
Gene Ontology
ID GO:0016787
description deoxynucleoside triphosphate triphosphohydrolase samhd1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22258: 49665-53224
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021510_010 0.0 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
2 Hb_001586_030 0.0804485478 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
3 Hb_065500_020 0.081361855 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
4 Hb_001105_020 0.0839266044 - - expressed protein, putative [Ricinus communis]
5 Hb_003058_260 0.0891638132 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
6 Hb_003037_020 0.092757001 - - hypothetical protein JCGZ_22910 [Jatropha curcas]
7 Hb_011377_040 0.0936498057 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
8 Hb_001377_350 0.0944261191 - - PREDICTED: exportin-2 [Jatropha curcas]
9 Hb_004096_110 0.0948486166 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
10 Hb_001348_080 0.0950102834 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
11 Hb_012330_010 0.0954428442 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
12 Hb_000261_480 0.095506101 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
13 Hb_003280_020 0.0956474763 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
14 Hb_004411_030 0.0958476878 - - hypothetical protein POPTR_0017s00310g [Populus trichocarpa]
15 Hb_003758_010 0.0970714008 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
16 Hb_002071_070 0.0971337411 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
17 Hb_011883_020 0.097872015 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
18 Hb_011819_020 0.0979048421 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
19 Hb_002890_130 0.0985302889 - - tip120, putative [Ricinus communis]
20 Hb_012632_010 0.0991312928 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]

Gene co-expression network

sample Hb_021510_010 Hb_021510_010 Hb_001586_030 Hb_001586_030 Hb_021510_010--Hb_001586_030 Hb_065500_020 Hb_065500_020 Hb_021510_010--Hb_065500_020 Hb_001105_020 Hb_001105_020 Hb_021510_010--Hb_001105_020 Hb_003058_260 Hb_003058_260 Hb_021510_010--Hb_003058_260 Hb_003037_020 Hb_003037_020 Hb_021510_010--Hb_003037_020 Hb_011377_040 Hb_011377_040 Hb_021510_010--Hb_011377_040 Hb_011883_020 Hb_011883_020 Hb_001586_030--Hb_011883_020 Hb_004096_110 Hb_004096_110 Hb_001586_030--Hb_004096_110 Hb_005074_020 Hb_005074_020 Hb_001586_030--Hb_005074_020 Hb_001691_200 Hb_001691_200 Hb_001586_030--Hb_001691_200 Hb_000535_050 Hb_000535_050 Hb_001586_030--Hb_000535_050 Hb_060980_010 Hb_060980_010 Hb_065500_020--Hb_060980_010 Hb_002749_060 Hb_002749_060 Hb_065500_020--Hb_002749_060 Hb_016172_030 Hb_016172_030 Hb_065500_020--Hb_016172_030 Hb_011819_020 Hb_011819_020 Hb_065500_020--Hb_011819_020 Hb_021165_010 Hb_021165_010 Hb_065500_020--Hb_021165_010 Hb_008289_040 Hb_008289_040 Hb_065500_020--Hb_008289_040 Hb_000614_240 Hb_000614_240 Hb_001105_020--Hb_000614_240 Hb_002026_150 Hb_002026_150 Hb_001105_020--Hb_002026_150 Hb_000261_480 Hb_000261_480 Hb_001105_020--Hb_000261_480 Hb_000011_060 Hb_000011_060 Hb_001105_020--Hb_000011_060 Hb_000189_550 Hb_000189_550 Hb_001105_020--Hb_000189_550 Hb_009296_040 Hb_009296_040 Hb_001105_020--Hb_009296_040 Hb_012632_010 Hb_012632_010 Hb_003058_260--Hb_012632_010 Hb_002071_070 Hb_002071_070 Hb_003058_260--Hb_002071_070 Hb_004787_050 Hb_004787_050 Hb_003058_260--Hb_004787_050 Hb_000856_040 Hb_000856_040 Hb_003058_260--Hb_000856_040 Hb_000313_120 Hb_000313_120 Hb_003058_260--Hb_000313_120 Hb_001998_240 Hb_001998_240 Hb_003058_260--Hb_001998_240 Hb_003037_020--Hb_011883_020 Hb_003228_110 Hb_003228_110 Hb_003037_020--Hb_003228_110 Hb_003037_020--Hb_003058_260 Hb_000243_260 Hb_000243_260 Hb_003037_020--Hb_000243_260 Hb_003037_020--Hb_002071_070 Hb_006970_020 Hb_006970_020 Hb_011377_040--Hb_006970_020 Hb_074197_040 Hb_074197_040 Hb_011377_040--Hb_074197_040 Hb_012330_010 Hb_012330_010 Hb_011377_040--Hb_012330_010 Hb_001301_270 Hb_001301_270 Hb_011377_040--Hb_001301_270 Hb_000078_140 Hb_000078_140 Hb_011377_040--Hb_000078_140 Hb_000046_540 Hb_000046_540 Hb_011377_040--Hb_000046_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.05263 5.84383 9.04412 8.52463 4.99588 6.42481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.01669 3.06213 8.51695 11.2185 7.96049

CAGE analysis