Hb_021530_010

Information

Type -
Description -
Location Contig21530: 4983-8504
Sequence    

Annotation

kegg
ID rcu:RCOM_0802990
description lupus la ribonucleoprotein, putative
nr
ID XP_012077445.1
description PREDICTED: la protein 1 [Jatropha curcas]
swissprot
ID Q93ZV7
description La protein 1 OS=Arabidopsis thaliana GN=LA1 PE=1 SV=1
trembl
ID A0A067KPM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07781 PE=4 SV=1
Gene Ontology
ID GO:0005634
description la protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22261: 7030-7175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021530_010 0.0 - - PREDICTED: la protein 1 [Jatropha curcas]
2 Hb_005610_080 0.1052348488 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006132_040 0.1108201996 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
4 Hb_130389_010 0.1112901173 - - PREDICTED: la protein 1 [Jatropha curcas]
5 Hb_004236_030 0.1261168562 - - unknown [Lotus japonicus]
6 Hb_005054_310 0.1307799441 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
7 Hb_003430_030 0.1317979774 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
8 Hb_004319_070 0.1326186805 - - hypothetical protein RCOM_0852460 [Ricinus communis]
9 Hb_004195_120 0.1332754989 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
10 Hb_000227_310 0.135717044 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
11 Hb_003228_030 0.1440629941 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
12 Hb_000890_010 0.144125538 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007576_220 0.1466293474 - - PREDICTED: kanadaptin [Jatropha curcas]
14 Hb_001231_080 0.1485784204 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
15 Hb_018301_010 0.1518942757 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
16 Hb_000692_120 0.1520451353 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
17 Hb_000836_370 0.1529366629 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
18 Hb_005054_190 0.1537481991 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
19 Hb_002942_110 0.1542338107 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
20 Hb_153161_010 0.1545536829 - - phospholipid-transporting atpase, putative [Ricinus communis]

Gene co-expression network

sample Hb_021530_010 Hb_021530_010 Hb_005610_080 Hb_005610_080 Hb_021530_010--Hb_005610_080 Hb_006132_040 Hb_006132_040 Hb_021530_010--Hb_006132_040 Hb_130389_010 Hb_130389_010 Hb_021530_010--Hb_130389_010 Hb_004236_030 Hb_004236_030 Hb_021530_010--Hb_004236_030 Hb_005054_310 Hb_005054_310 Hb_021530_010--Hb_005054_310 Hb_003430_030 Hb_003430_030 Hb_021530_010--Hb_003430_030 Hb_005610_080--Hb_006132_040 Hb_000024_120 Hb_000024_120 Hb_005610_080--Hb_000024_120 Hb_005610_080--Hb_003430_030 Hb_000345_490 Hb_000345_490 Hb_005610_080--Hb_000345_490 Hb_005054_190 Hb_005054_190 Hb_005610_080--Hb_005054_190 Hb_000890_010 Hb_000890_010 Hb_005610_080--Hb_000890_010 Hb_006132_040--Hb_000890_010 Hb_006132_040--Hb_004236_030 Hb_003992_180 Hb_003992_180 Hb_006132_040--Hb_003992_180 Hb_000227_310 Hb_000227_310 Hb_006132_040--Hb_000227_310 Hb_008165_030 Hb_008165_030 Hb_006132_040--Hb_008165_030 Hb_007982_050 Hb_007982_050 Hb_130389_010--Hb_007982_050 Hb_000526_030 Hb_000526_030 Hb_130389_010--Hb_000526_030 Hb_004195_120 Hb_004195_120 Hb_130389_010--Hb_004195_120 Hb_127599_010 Hb_127599_010 Hb_130389_010--Hb_127599_010 Hb_004319_070 Hb_004319_070 Hb_130389_010--Hb_004319_070 Hb_000579_190 Hb_000579_190 Hb_004236_030--Hb_000579_190 Hb_001558_060 Hb_001558_060 Hb_004236_030--Hb_001558_060 Hb_004236_030--Hb_000890_010 Hb_000375_290 Hb_000375_290 Hb_004236_030--Hb_000375_290 Hb_002107_060 Hb_002107_060 Hb_004236_030--Hb_002107_060 Hb_000836_370 Hb_000836_370 Hb_005054_310--Hb_000836_370 Hb_003228_030 Hb_003228_030 Hb_005054_310--Hb_003228_030 Hb_000056_300 Hb_000056_300 Hb_005054_310--Hb_000056_300 Hb_005054_310--Hb_000227_310 Hb_128695_030 Hb_128695_030 Hb_005054_310--Hb_128695_030 Hb_001484_100 Hb_001484_100 Hb_005054_310--Hb_001484_100 Hb_003430_030--Hb_005054_190 Hb_000363_280 Hb_000363_280 Hb_003430_030--Hb_000363_280 Hb_003430_030--Hb_000024_120 Hb_000120_420 Hb_000120_420 Hb_003430_030--Hb_000120_420 Hb_003430_030--Hb_000345_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.14269 9.48122 6.71781 1.14987 3.29308 2.10363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.85734 1.1589 0.853357 3.37121 1.17057

CAGE analysis