Hb_021531_010

Information

Type -
Description -
Location Contig21531: 460-6813
Sequence    

Annotation

kegg
ID rcu:RCOM_0901450
description receptor-kinase, putative (EC:1.3.1.74 2.7.10.2)
nr
ID XP_002517677.1
description receptor-kinase, putative [Ricinus communis]
swissprot
ID Q9FL28
description LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1
trembl
ID B9RVA8
description Receptor-kinase, putative OS=Ricinus communis GN=RCOM_0901450 PE=4 SV=1
Gene Ontology
ID GO:0016301
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22263: 6198-6367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021531_010 0.0 - - receptor-kinase, putative [Ricinus communis]
2 Hb_005523_040 0.104886688 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
3 Hb_000544_070 0.1059774495 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
4 Hb_007597_030 0.1090314518 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_005210_010 0.1137351888 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
6 Hb_002475_060 0.1155968624 - - PREDICTED: potassium channel SKOR-like isoform X1 [Jatropha curcas]
7 Hb_002249_090 0.1181853921 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
8 Hb_002485_050 0.118626496 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
9 Hb_000049_100 0.1186709251 - - Photosystem II reaction center W protein, putative [Ricinus communis]
10 Hb_001195_290 0.1201491575 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
11 Hb_001958_060 0.1204118656 - - PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]
12 Hb_074548_010 0.12109907 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_003605_060 0.1215748606 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
14 Hb_003602_100 0.1217436887 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
15 Hb_004306_090 0.1247691788 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
16 Hb_007803_040 0.1268075834 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
17 Hb_002609_140 0.1276288316 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_004117_200 0.1278110892 - - PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
19 Hb_000390_160 0.1298755048 - - PREDICTED: adenosine kinase [Jatropha curcas]
20 Hb_005000_110 0.1314712409 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_021531_010 Hb_021531_010 Hb_005523_040 Hb_005523_040 Hb_021531_010--Hb_005523_040 Hb_000544_070 Hb_000544_070 Hb_021531_010--Hb_000544_070 Hb_007597_030 Hb_007597_030 Hb_021531_010--Hb_007597_030 Hb_005210_010 Hb_005210_010 Hb_021531_010--Hb_005210_010 Hb_002475_060 Hb_002475_060 Hb_021531_010--Hb_002475_060 Hb_002249_090 Hb_002249_090 Hb_021531_010--Hb_002249_090 Hb_001517_010 Hb_001517_010 Hb_005523_040--Hb_001517_010 Hb_005523_040--Hb_005210_010 Hb_074548_010 Hb_074548_010 Hb_005523_040--Hb_074548_010 Hb_000856_280 Hb_000856_280 Hb_005523_040--Hb_000856_280 Hb_005348_120 Hb_005348_120 Hb_005523_040--Hb_005348_120 Hb_001195_290 Hb_001195_290 Hb_005523_040--Hb_001195_290 Hb_004306_090 Hb_004306_090 Hb_000544_070--Hb_004306_090 Hb_002485_050 Hb_002485_050 Hb_000544_070--Hb_002485_050 Hb_002609_140 Hb_002609_140 Hb_000544_070--Hb_002609_140 Hb_007803_040 Hb_007803_040 Hb_000544_070--Hb_007803_040 Hb_004920_020 Hb_004920_020 Hb_000544_070--Hb_004920_020 Hb_000544_070--Hb_074548_010 Hb_002272_210 Hb_002272_210 Hb_007597_030--Hb_002272_210 Hb_005000_110 Hb_005000_110 Hb_007597_030--Hb_005000_110 Hb_001343_030 Hb_001343_030 Hb_007597_030--Hb_001343_030 Hb_000460_040 Hb_000460_040 Hb_007597_030--Hb_000460_040 Hb_003623_080 Hb_003623_080 Hb_007597_030--Hb_003623_080 Hb_005211_080 Hb_005211_080 Hb_007597_030--Hb_005211_080 Hb_000049_100 Hb_000049_100 Hb_005210_010--Hb_000049_100 Hb_000390_160 Hb_000390_160 Hb_005210_010--Hb_000390_160 Hb_005210_010--Hb_001195_290 Hb_005210_010--Hb_000856_280 Hb_006970_030 Hb_006970_030 Hb_005210_010--Hb_006970_030 Hb_002475_060--Hb_001195_290 Hb_000723_320 Hb_000723_320 Hb_002475_060--Hb_000723_320 Hb_002235_070 Hb_002235_070 Hb_002475_060--Hb_002235_070 Hb_002475_060--Hb_005523_040 Hb_001946_120 Hb_001946_120 Hb_002475_060--Hb_001946_120 Hb_003602_100 Hb_003602_100 Hb_002249_090--Hb_003602_100 Hb_000174_080 Hb_000174_080 Hb_002249_090--Hb_000174_080 Hb_002249_090--Hb_002609_140 Hb_002249_090--Hb_000544_070 Hb_000648_070 Hb_000648_070 Hb_002249_090--Hb_000648_070 Hb_107647_010 Hb_107647_010 Hb_002249_090--Hb_107647_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00987583 0.0473337 0.42956 0.161391 0.00988962 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0224439 0.0176595 0 0.0070254 0.671876

CAGE analysis