Hb_021576_010

Information

Type -
Description -
Location Contig21576: 3098-9847
Sequence    

Annotation

kegg
ID rcu:RCOM_0920800
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012076409.1
description PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
swissprot
ID Q9SZ53
description Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1
trembl
ID A0A067KER0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07074 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 60

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22306: 3136-9772 , PASA_asmbl_22307: 7377-9386
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021576_010 0.0 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
2 Hb_000979_220 0.0449438333 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
3 Hb_004096_110 0.0452133677 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
4 Hb_003777_290 0.0554660457 - - polypyrimidine tract binding protein, putative [Ricinus communis]
5 Hb_000327_250 0.0690037984 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
6 Hb_016347_010 0.0738009337 - - protein transporter, putative [Ricinus communis]
7 Hb_001828_180 0.0768744702 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
8 Hb_011224_160 0.077383593 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
9 Hb_011883_020 0.0785595904 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
10 Hb_000409_050 0.0792789373 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
11 Hb_000190_090 0.0802982846 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
12 Hb_001587_030 0.0817944098 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
13 Hb_027506_010 0.0818647586 - - PREDICTED: cullin-4 [Jatropha curcas]
14 Hb_012022_080 0.0828805426 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_001269_600 0.0844806293 - - protein phosphatase 2c, putative [Ricinus communis]
16 Hb_002046_010 0.0848339814 - - conserved hypothetical protein [Ricinus communis]
17 Hb_060980_010 0.0855189002 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
18 Hb_000363_190 0.0858582209 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
19 Hb_005489_040 0.0860268864 - - PREDICTED: cullin-1 [Jatropha curcas]
20 Hb_000787_200 0.0861345089 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_021576_010 Hb_021576_010 Hb_000979_220 Hb_000979_220 Hb_021576_010--Hb_000979_220 Hb_004096_110 Hb_004096_110 Hb_021576_010--Hb_004096_110 Hb_003777_290 Hb_003777_290 Hb_021576_010--Hb_003777_290 Hb_000327_250 Hb_000327_250 Hb_021576_010--Hb_000327_250 Hb_016347_010 Hb_016347_010 Hb_021576_010--Hb_016347_010 Hb_001828_180 Hb_001828_180 Hb_021576_010--Hb_001828_180 Hb_003528_050 Hb_003528_050 Hb_000979_220--Hb_003528_050 Hb_000979_220--Hb_003777_290 Hb_027506_010 Hb_027506_010 Hb_000979_220--Hb_027506_010 Hb_000979_220--Hb_004096_110 Hb_002046_010 Hb_002046_010 Hb_000979_220--Hb_002046_010 Hb_004096_110--Hb_003777_290 Hb_004096_110--Hb_000327_250 Hb_011883_020 Hb_011883_020 Hb_004096_110--Hb_011883_020 Hb_001269_600 Hb_001269_600 Hb_004096_110--Hb_001269_600 Hb_011224_160 Hb_011224_160 Hb_003777_290--Hb_011224_160 Hb_000363_190 Hb_000363_190 Hb_003777_290--Hb_000363_190 Hb_005489_040 Hb_005489_040 Hb_003777_290--Hb_005489_040 Hb_003544_030 Hb_003544_030 Hb_000327_250--Hb_003544_030 Hb_000327_250--Hb_016347_010 Hb_005663_110 Hb_005663_110 Hb_000327_250--Hb_005663_110 Hb_001434_080 Hb_001434_080 Hb_000327_250--Hb_001434_080 Hb_000363_040 Hb_000363_040 Hb_016347_010--Hb_000363_040 Hb_004677_050 Hb_004677_050 Hb_016347_010--Hb_004677_050 Hb_002908_050 Hb_002908_050 Hb_016347_010--Hb_002908_050 Hb_016347_010--Hb_003544_030 Hb_000663_060 Hb_000663_060 Hb_001828_180--Hb_000663_060 Hb_001828_180--Hb_000363_190 Hb_000778_010 Hb_000778_010 Hb_001828_180--Hb_000778_010 Hb_023001_040 Hb_023001_040 Hb_001828_180--Hb_023001_040 Hb_002301_100 Hb_002301_100 Hb_001828_180--Hb_002301_100 Hb_002439_010 Hb_002439_010 Hb_001828_180--Hb_002439_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.5703 19.4417 21.2581 24.1033 15.1692 10.6893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0476 14.9104 13.426 40.407 24.4939

CAGE analysis