Hb_021576_040

Information

Type -
Description -
Location Contig21576: 14444-17371
Sequence    

Annotation

kegg
ID rcu:RCOM_0920830
description hypothetical protein
nr
ID XP_002515419.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q3KPR1
description Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis GN=c1d PE=2 SV=1
trembl
ID B9RNV0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0920830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22310: 15925-16260
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021576_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002234_140 0.0741348133 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
3 Hb_002296_050 0.0761331359 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
4 Hb_000009_530 0.0821144415 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
5 Hb_000144_100 0.0868976635 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
6 Hb_000610_010 0.088254462 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
7 Hb_000710_010 0.0902232113 - - PREDICTED: uncharacterized protein LOC105630356 [Jatropha curcas]
8 Hb_000286_070 0.0915824538 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
9 Hb_002585_040 0.094828333 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
10 Hb_000107_190 0.0970954831 - - 50S ribosomal protein L20 [Hevea brasiliensis]
11 Hb_003687_230 0.0971612776 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
12 Hb_003935_020 0.0997594497 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000487_210 0.0999338722 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
14 Hb_001504_020 0.1006625072 - - 40S ribosomal protein S12A [Hevea brasiliensis]
15 Hb_001586_040 0.1008903637 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
16 Hb_003292_040 0.104357177 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
17 Hb_004785_190 0.1060059421 - - PHD finger family protein [Populus trichocarpa]
18 Hb_009659_050 0.1066563213 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
19 Hb_001864_070 0.1070520678 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
20 Hb_000010_110 0.107526913 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_021576_040 Hb_021576_040 Hb_002234_140 Hb_002234_140 Hb_021576_040--Hb_002234_140 Hb_002296_050 Hb_002296_050 Hb_021576_040--Hb_002296_050 Hb_000009_530 Hb_000009_530 Hb_021576_040--Hb_000009_530 Hb_000144_100 Hb_000144_100 Hb_021576_040--Hb_000144_100 Hb_000610_010 Hb_000610_010 Hb_021576_040--Hb_000610_010 Hb_000710_010 Hb_000710_010 Hb_021576_040--Hb_000710_010 Hb_001504_020 Hb_001504_020 Hb_002234_140--Hb_001504_020 Hb_000444_080 Hb_000444_080 Hb_002234_140--Hb_000444_080 Hb_000563_230 Hb_000563_230 Hb_002234_140--Hb_000563_230 Hb_003935_020 Hb_003935_020 Hb_002234_140--Hb_003935_020 Hb_002234_140--Hb_000009_530 Hb_000107_190 Hb_000107_190 Hb_002296_050--Hb_000107_190 Hb_000220_040 Hb_000220_040 Hb_002296_050--Hb_000220_040 Hb_002296_050--Hb_000610_010 Hb_010068_040 Hb_010068_040 Hb_002296_050--Hb_010068_040 Hb_002296_050--Hb_000009_530 Hb_000009_530--Hb_000610_010 Hb_000286_070 Hb_000286_070 Hb_000009_530--Hb_000286_070 Hb_003687_230 Hb_003687_230 Hb_000009_530--Hb_003687_230 Hb_004093_090 Hb_004093_090 Hb_000009_530--Hb_004093_090 Hb_000009_530--Hb_000144_100 Hb_003292_040 Hb_003292_040 Hb_000009_530--Hb_003292_040 Hb_000144_100--Hb_000220_040 Hb_000144_100--Hb_000610_010 Hb_000275_170 Hb_000275_170 Hb_000144_100--Hb_000275_170 Hb_000144_100--Hb_002296_050 Hb_000144_100--Hb_003292_040 Hb_000610_010--Hb_004093_090 Hb_000610_010--Hb_003687_230 Hb_000610_010--Hb_000107_190 Hb_073973_130 Hb_073973_130 Hb_000610_010--Hb_073973_130 Hb_000610_010--Hb_003292_040 Hb_000710_010--Hb_002234_140 Hb_001427_050 Hb_001427_050 Hb_000710_010--Hb_001427_050 Hb_008112_040 Hb_008112_040 Hb_000710_010--Hb_008112_040 Hb_000710_010--Hb_003687_230 Hb_000438_170 Hb_000438_170 Hb_000710_010--Hb_000438_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2875 15.2247 15.5934 8.57986 15.4314 13.3302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5721 24.877 4.1272 7.51191 6.37233

CAGE analysis