Hb_021576_050

Information

Type -
Description -
Location Contig21576: 17417-18303
Sequence    

Annotation

kegg
ID rcu:RCOM_0920850
description Early nodulin 55-2 precursor, putative
nr
ID XP_012076421.1
description PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
swissprot
ID Q9SK27
description Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2
trembl
ID A0A067KER5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07079 PE=4 SV=1
Gene Ontology
ID GO:0009055
description early nodulin-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22311: 17398-18295 , PASA_asmbl_22312: 17404-18295 , PASA_asmbl_22313: 17399-18310
cDNA
(Sanger)
(ID:Location)		 031_I03.ab1: 17558-18310 , 036_H21.ab1: 17523-18310 , 047_I02.ab1: 17514-18310

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021576_050 0.0 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
2 Hb_128392_010 0.074694165 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
3 Hb_000527_020 0.0818538947 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
4 Hb_003847_060 0.0940559719 - - syntaxin, putative [Ricinus communis]
5 Hb_000035_230 0.0959223957 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
6 Hb_005398_050 0.0971990038 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
7 Hb_118282_020 0.1049014229 - - PREDICTED: uncharacterized protein LOC105631532 isoform X3 [Jatropha curcas]
8 Hb_001307_150 0.105855775 - - receptor protein kinase, putative [Ricinus communis]
9 Hb_072201_010 0.1088837687 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
10 Hb_004774_080 0.1096729679 - - conserved hypothetical protein [Ricinus communis]
11 Hb_016898_020 0.114281715 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
12 Hb_001699_270 0.1160983596 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
13 Hb_000162_160 0.1176382252 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
14 Hb_001950_090 0.1176597269 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
15 Hb_003464_010 0.1193126903 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000856_390 0.1222247157 - - conserved hypothetical protein [Ricinus communis]
17 Hb_078448_010 0.1228507252 - - hypothetical protein L484_017526 [Morus notabilis]
18 Hb_003680_180 0.1232258161 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
19 Hb_000069_650 0.1253635023 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001123_330 0.1277055792 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]

Gene co-expression network

sample Hb_021576_050 Hb_021576_050 Hb_128392_010 Hb_128392_010 Hb_021576_050--Hb_128392_010 Hb_000527_020 Hb_000527_020 Hb_021576_050--Hb_000527_020 Hb_003847_060 Hb_003847_060 Hb_021576_050--Hb_003847_060 Hb_000035_230 Hb_000035_230 Hb_021576_050--Hb_000035_230 Hb_005398_050 Hb_005398_050 Hb_021576_050--Hb_005398_050 Hb_118282_020 Hb_118282_020 Hb_021576_050--Hb_118282_020 Hb_128392_010--Hb_000527_020 Hb_128392_010--Hb_000035_230 Hb_128392_010--Hb_003847_060 Hb_128392_010--Hb_005398_050 Hb_003464_010 Hb_003464_010 Hb_128392_010--Hb_003464_010 Hb_000890_140 Hb_000890_140 Hb_000527_020--Hb_000890_140 Hb_000527_020--Hb_005398_050 Hb_001390_040 Hb_001390_040 Hb_000527_020--Hb_001390_040 Hb_006573_310 Hb_006573_310 Hb_000527_020--Hb_006573_310 Hb_003847_060--Hb_005398_050 Hb_001307_150 Hb_001307_150 Hb_003847_060--Hb_001307_150 Hb_001950_090 Hb_001950_090 Hb_003847_060--Hb_001950_090 Hb_001699_270 Hb_001699_270 Hb_003847_060--Hb_001699_270 Hb_000856_390 Hb_000856_390 Hb_003847_060--Hb_000856_390 Hb_000480_060 Hb_000480_060 Hb_003847_060--Hb_000480_060 Hb_001247_060 Hb_001247_060 Hb_000035_230--Hb_001247_060 Hb_000089_090 Hb_000089_090 Hb_000035_230--Hb_000089_090 Hb_000035_230--Hb_003847_060 Hb_012092_040 Hb_012092_040 Hb_000035_230--Hb_012092_040 Hb_000035_230--Hb_005398_050 Hb_078448_010 Hb_078448_010 Hb_005398_050--Hb_078448_010 Hb_005398_050--Hb_001307_150 Hb_016898_020 Hb_016898_020 Hb_005398_050--Hb_016898_020 Hb_004774_080 Hb_004774_080 Hb_118282_020--Hb_004774_080 Hb_118282_020--Hb_000527_020 Hb_118282_020--Hb_005398_050 Hb_000418_040 Hb_000418_040 Hb_118282_020--Hb_000418_040 Hb_007474_020 Hb_007474_020 Hb_118282_020--Hb_007474_020 Hb_118282_020--Hb_001307_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64287 1.63267 108.865 86.8375 0.142377 0.574012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.339685 0 0.193167 4.13047 3.21531

CAGE analysis