Hb_021576_100

Information

Type -
Description -
Location Contig21576: 47824-51838
Sequence    

Annotation

kegg
ID rcu:RCOM_0920900
description Enoyl-CoA hydratase, mitochondrial precursor, putative
nr
ID XP_002515426.1
description Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
swissprot
ID Q8RXN4
description 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g31810 PE=2 SV=1
trembl
ID B9RNV7
description Enoyl-CoA hydratase, mitochondrial, putative OS=Ricinus communis GN=RCOM_0920900 PE=4 SV=1
Gene Ontology
ID GO:0003860
description 3-hydroxyisobutyryl- hydrolase-like protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22317: 47894-51730 , PASA_asmbl_22319: 36547-60760
cDNA
(Sanger)
(ID:Location)		 026_A15r.ab1: 36547-60760

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021576_100 0.0 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
2 Hb_142368_010 0.0665533799 - - mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]
3 Hb_000308_030 0.0689905127 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
4 Hb_005337_090 0.0691022611 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
5 Hb_073973_130 0.0705314857 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
6 Hb_000005_220 0.071629537 - - DNA ligase 1, partial [Glycine soja]
7 Hb_079526_030 0.073472509 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
8 Hb_002872_030 0.0739796205 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
9 Hb_000331_110 0.0741729302 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
10 Hb_002197_020 0.0779221002 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
11 Hb_002311_180 0.0801203771 - - drought-responsive family protein [Populus trichocarpa]
12 Hb_002876_230 0.0814623527 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
13 Hb_002686_170 0.0826731689 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
14 Hb_008453_140 0.0828232652 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
15 Hb_001089_110 0.0832389085 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000039_220 0.0833643289 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
17 Hb_022132_050 0.0845245429 - - GTP binding protein, putative [Ricinus communis]
18 Hb_000260_680 0.0849438223 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
19 Hb_003878_110 0.0853012575 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
20 Hb_003001_080 0.0856606483 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]

Gene co-expression network

sample Hb_021576_100 Hb_021576_100 Hb_142368_010 Hb_142368_010 Hb_021576_100--Hb_142368_010 Hb_000308_030 Hb_000308_030 Hb_021576_100--Hb_000308_030 Hb_005337_090 Hb_005337_090 Hb_021576_100--Hb_005337_090 Hb_073973_130 Hb_073973_130 Hb_021576_100--Hb_073973_130 Hb_000005_220 Hb_000005_220 Hb_021576_100--Hb_000005_220 Hb_079526_030 Hb_079526_030 Hb_021576_100--Hb_079526_030 Hb_152175_010 Hb_152175_010 Hb_142368_010--Hb_152175_010 Hb_003001_080 Hb_003001_080 Hb_142368_010--Hb_003001_080 Hb_001227_030 Hb_001227_030 Hb_142368_010--Hb_001227_030 Hb_005137_050 Hb_005137_050 Hb_142368_010--Hb_005137_050 Hb_001862_210 Hb_001862_210 Hb_142368_010--Hb_001862_210 Hb_000308_030--Hb_005337_090 Hb_000179_030 Hb_000179_030 Hb_000308_030--Hb_000179_030 Hb_000915_020 Hb_000915_020 Hb_000308_030--Hb_000915_020 Hb_008453_140 Hb_008453_140 Hb_000308_030--Hb_008453_140 Hb_001926_030 Hb_001926_030 Hb_000308_030--Hb_001926_030 Hb_001089_110 Hb_001089_110 Hb_005337_090--Hb_001089_110 Hb_027428_010 Hb_027428_010 Hb_005337_090--Hb_027428_010 Hb_005337_090--Hb_000005_220 Hb_005337_090--Hb_073973_130 Hb_033834_030 Hb_033834_030 Hb_005337_090--Hb_033834_030 Hb_000107_190 Hb_000107_190 Hb_073973_130--Hb_000107_190 Hb_073973_130--Hb_027428_010 Hb_002872_030 Hb_002872_030 Hb_073973_130--Hb_002872_030 Hb_022132_050 Hb_022132_050 Hb_073973_130--Hb_022132_050 Hb_000610_010 Hb_000610_010 Hb_073973_130--Hb_000610_010 Hb_183612_040 Hb_183612_040 Hb_000005_220--Hb_183612_040 Hb_000035_110 Hb_000035_110 Hb_000005_220--Hb_000035_110 Hb_007441_020 Hb_007441_020 Hb_000005_220--Hb_007441_020 Hb_002445_100 Hb_002445_100 Hb_000005_220--Hb_002445_100 Hb_005779_010 Hb_005779_010 Hb_000005_220--Hb_005779_010 Hb_079526_030--Hb_001089_110 Hb_000331_110 Hb_000331_110 Hb_079526_030--Hb_000331_110 Hb_001433_070 Hb_001433_070 Hb_079526_030--Hb_001433_070 Hb_003878_110 Hb_003878_110 Hb_079526_030--Hb_003878_110 Hb_001821_160 Hb_001821_160 Hb_079526_030--Hb_001821_160 Hb_000160_350 Hb_000160_350 Hb_079526_030--Hb_000160_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4154 14.0462 21.1515 8.43434 14.3191 17.1155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.289 13.9689 10.5166 10.9947 8.88547

CAGE analysis