Hb_021576_110

Information

Type transcription factor
Description TF Family: WRKY
Location Contig21576: 53176-56014
Sequence    

Annotation

kegg
ID rcu:RCOM_0920910
description WRKY transcription factor, putative
nr
ID XP_012076428.1
description PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
swissprot
ID P59583
description Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1
trembl
ID M9TMB9
description Uncharacterized protein OS=Jatropha curcas GN=WRKY03 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22320: 53301-53867
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021576_110 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
2 Hb_000331_670 0.0633218777 - - PREDICTED: protein tipD [Jatropha curcas]
3 Hb_000868_110 0.0698529266 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
4 Hb_140506_010 0.0702735188 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Jatropha curcas]
5 Hb_001818_070 0.0723526886 - - carbon catabolite repressor protein, putative [Ricinus communis]
6 Hb_001157_040 0.0725979763 - - casein kinase, putative [Ricinus communis]
7 Hb_001838_060 0.0769423654 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
8 Hb_002056_090 0.0771791568 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
9 Hb_005541_010 0.0820030304 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
10 Hb_015934_040 0.0833047804 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
11 Hb_020831_030 0.0837571961 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000563_320 0.0839002897 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
13 Hb_000049_260 0.0842049267 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_003211_020 0.0847234905 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Jatropha curcas]
15 Hb_015807_150 0.0861006621 - - actin binding protein, putative [Ricinus communis]
16 Hb_001195_530 0.0869147693 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003640_040 0.0878227864 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
18 Hb_002600_020 0.0898159607 - - unnamed protein product [Vitis vinifera]
19 Hb_001248_060 0.0906420183 - - conserved hypothetical protein [Ricinus communis]
20 Hb_095296_010 0.0925473392 - - PREDICTED: syntaxin-32 [Jatropha curcas]

Gene co-expression network

sample Hb_021576_110 Hb_021576_110 Hb_000331_670 Hb_000331_670 Hb_021576_110--Hb_000331_670 Hb_000868_110 Hb_000868_110 Hb_021576_110--Hb_000868_110 Hb_140506_010 Hb_140506_010 Hb_021576_110--Hb_140506_010 Hb_001818_070 Hb_001818_070 Hb_021576_110--Hb_001818_070 Hb_001157_040 Hb_001157_040 Hb_021576_110--Hb_001157_040 Hb_001838_060 Hb_001838_060 Hb_021576_110--Hb_001838_060 Hb_015934_040 Hb_015934_040 Hb_000331_670--Hb_015934_040 Hb_003211_020 Hb_003211_020 Hb_000331_670--Hb_003211_020 Hb_000331_670--Hb_001157_040 Hb_007163_120 Hb_007163_120 Hb_000331_670--Hb_007163_120 Hb_013399_100 Hb_013399_100 Hb_000331_670--Hb_013399_100 Hb_095296_010 Hb_095296_010 Hb_000868_110--Hb_095296_010 Hb_002073_200 Hb_002073_200 Hb_000868_110--Hb_002073_200 Hb_164010_040 Hb_164010_040 Hb_000868_110--Hb_164010_040 Hb_003001_080 Hb_003001_080 Hb_000868_110--Hb_003001_080 Hb_000869_080 Hb_000869_080 Hb_000868_110--Hb_000869_080 Hb_140506_010--Hb_001818_070 Hb_005541_010 Hb_005541_010 Hb_140506_010--Hb_005541_010 Hb_000049_260 Hb_000049_260 Hb_140506_010--Hb_000049_260 Hb_000125_170 Hb_000125_170 Hb_140506_010--Hb_000125_170 Hb_004767_050 Hb_004767_050 Hb_140506_010--Hb_004767_050 Hb_001818_070--Hb_001838_060 Hb_011491_010 Hb_011491_010 Hb_001818_070--Hb_011491_010 Hb_001818_070--Hb_004767_050 Hb_001818_070--Hb_003211_020 Hb_048219_010 Hb_048219_010 Hb_001818_070--Hb_048219_010 Hb_000866_220 Hb_000866_220 Hb_001157_040--Hb_000866_220 Hb_001157_040--Hb_001838_060 Hb_000563_320 Hb_000563_320 Hb_001157_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_001157_040--Hb_000016_250 Hb_000538_270 Hb_000538_270 Hb_001157_040--Hb_000538_270 Hb_001329_160 Hb_001329_160 Hb_001838_060--Hb_001329_160 Hb_000976_310 Hb_000976_310 Hb_001838_060--Hb_000976_310 Hb_001838_060--Hb_007163_120 Hb_001838_060--Hb_000331_670
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.30571 2.44736 1.60491 1.53793 1.78423 1.97513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17098 2.32865 2.25652 1.3183 0.855262

CAGE analysis