Hb_021576_120

Information

Type -
Description -
Location Contig21576: 56830-62693
Sequence    

Annotation

kegg
ID rcu:RCOM_0920920
description DNA-directed RNA polymerase subunit, putative
nr
ID XP_002515428.1
description DNA-directed RNA polymerase subunit, putative [Ricinus communis]
swissprot
ID Q9LK40
description DNA-directed RNA polymerases IV and V subunit 2 OS=Arabidopsis thaliana GN=NRPD2 PE=1 SV=1
trembl
ID B9RNV9
description DNA-directed RNA polymerase OS=Ricinus communis GN=RCOM_0920920 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerases iv and v subunit 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22318: 59009-60760
cDNA
(Sanger)
(ID:Location)		 026_A15.ab1: 60526-60760

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021576_120 0.0 - - DNA-directed RNA polymerase subunit, putative [Ricinus communis]
2 Hb_004920_110 0.1434976477 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008747_010 0.177763573 - - PREDICTED: protein argonaute 2-like isoform X1 [Jatropha curcas]
4 Hb_002597_020 0.1874318061 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_000254_010 0.1874485408 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
6 Hb_002909_080 0.1900586916 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
7 Hb_068576_010 0.192535753 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
8 Hb_000002_350 0.1942269383 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
9 Hb_002477_100 0.1944365485 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
10 Hb_000692_110 0.1970583141 - - PREDICTED: NEP1-interacting protein-like 1 [Jatropha curcas]
11 Hb_001754_260 0.2066673183 - - PREDICTED: uncharacterized protein LOC105643409 isoform X1 [Jatropha curcas]
12 Hb_001048_100 0.2069470188 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
13 Hb_043987_010 0.2078585817 - - glutathione s-transferase, putative [Ricinus communis]
14 Hb_023278_030 0.211683919 - - zinc finger protein, putative [Ricinus communis]
15 Hb_001179_010 0.212590464 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
16 Hb_018616_040 0.2129639611 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
17 Hb_001353_020 0.2158302754 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000616_010 0.2181597312 - - conserved hypothetical protein [Ricinus communis]
19 Hb_083412_010 0.2185604793 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
20 Hb_000020_070 0.2211184348 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]

Gene co-expression network

sample Hb_021576_120 Hb_021576_120 Hb_004920_110 Hb_004920_110 Hb_021576_120--Hb_004920_110 Hb_008747_010 Hb_008747_010 Hb_021576_120--Hb_008747_010 Hb_002597_020 Hb_002597_020 Hb_021576_120--Hb_002597_020 Hb_000254_010 Hb_000254_010 Hb_021576_120--Hb_000254_010 Hb_002909_080 Hb_002909_080 Hb_021576_120--Hb_002909_080 Hb_068576_010 Hb_068576_010 Hb_021576_120--Hb_068576_010 Hb_004920_110--Hb_000254_010 Hb_000847_020 Hb_000847_020 Hb_004920_110--Hb_000847_020 Hb_083412_010 Hb_083412_010 Hb_004920_110--Hb_083412_010 Hb_001048_100 Hb_001048_100 Hb_004920_110--Hb_001048_100 Hb_000616_010 Hb_000616_010 Hb_004920_110--Hb_000616_010 Hb_012423_060 Hb_012423_060 Hb_008747_010--Hb_012423_060 Hb_000186_030 Hb_000186_030 Hb_008747_010--Hb_000186_030 Hb_000753_110 Hb_000753_110 Hb_008747_010--Hb_000753_110 Hb_003299_020 Hb_003299_020 Hb_008747_010--Hb_003299_020 Hb_005545_020 Hb_005545_020 Hb_008747_010--Hb_005545_020 Hb_005622_020 Hb_005622_020 Hb_008747_010--Hb_005622_020 Hb_002597_020--Hb_068576_010 Hb_002477_100 Hb_002477_100 Hb_002597_020--Hb_002477_100 Hb_023278_030 Hb_023278_030 Hb_002597_020--Hb_023278_030 Hb_000005_340 Hb_000005_340 Hb_002597_020--Hb_000005_340 Hb_002597_020--Hb_000847_020 Hb_000254_010--Hb_001048_100 Hb_001189_100 Hb_001189_100 Hb_000254_010--Hb_001189_100 Hb_042202_020 Hb_042202_020 Hb_000254_010--Hb_042202_020 Hb_033234_010 Hb_033234_010 Hb_000254_010--Hb_033234_010 Hb_000254_010--Hb_000847_020 Hb_000024_130 Hb_000024_130 Hb_000254_010--Hb_000024_130 Hb_000979_260 Hb_000979_260 Hb_002909_080--Hb_000979_260 Hb_029584_160 Hb_029584_160 Hb_002909_080--Hb_029584_160 Hb_008066_080 Hb_008066_080 Hb_002909_080--Hb_008066_080 Hb_112064_010 Hb_112064_010 Hb_002909_080--Hb_112064_010 Hb_002909_080--Hb_008747_010 Hb_001353_020 Hb_001353_020 Hb_002909_080--Hb_001353_020 Hb_000094_120 Hb_000094_120 Hb_068576_010--Hb_000094_120 Hb_004656_010 Hb_004656_010 Hb_068576_010--Hb_004656_010 Hb_064985_010 Hb_064985_010 Hb_068576_010--Hb_064985_010 Hb_168068_010 Hb_168068_010 Hb_068576_010--Hb_168068_010 Hb_068576_010--Hb_000847_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.690649 1.13728 0.769356 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.446966 0.710115 0.474808

CAGE analysis