Hb_021576_130

Information

Type -
Description -
Location Contig21576: 64854-66596
Sequence    

Annotation

kegg
ID rcu:RCOM_0920930
description chorismate mutase cm2, putative (EC:5.4.99.5)
nr
ID XP_012076431.1
description PREDICTED: chorismate mutase 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9S7H4
description Chorismate mutase 2 OS=Arabidopsis thaliana GN=CM2 PE=1 SV=1
trembl
ID B9RNW0
description Chorismate mutase cm2, putative OS=Ricinus communis GN=RCOM_0920930 PE=4 SV=1
Gene Ontology
ID GO:0009507
description chorismate mutase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22323: 64653-66980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021576_130 0.0 - - PREDICTED: chorismate mutase 2 isoform X1 [Jatropha curcas]
2 Hb_004228_070 0.0619604528 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
3 Hb_039075_020 0.0657335377 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
4 Hb_007123_010 0.0802830562 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
5 Hb_003454_050 0.084397756 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
6 Hb_002205_150 0.0844632485 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
7 Hb_006922_020 0.0893259383 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
8 Hb_007221_040 0.0960046623 - - PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
9 Hb_002490_060 0.0961744968 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
10 Hb_001366_290 0.1005256977 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
11 Hb_003266_090 0.1021941198 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
12 Hb_043630_030 0.1065037097 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
13 Hb_026240_020 0.1073056283 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
14 Hb_001794_040 0.1081696417 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
15 Hb_106089_010 0.1082775226 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
16 Hb_044653_050 0.1108753744 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
17 Hb_012404_020 0.1109264583 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006196_030 0.1132945495 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
19 Hb_009393_090 0.1160122638 - - acyltransferase, putative [Ricinus communis]
20 Hb_002518_220 0.1190629418 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_021576_130 Hb_021576_130 Hb_004228_070 Hb_004228_070 Hb_021576_130--Hb_004228_070 Hb_039075_020 Hb_039075_020 Hb_021576_130--Hb_039075_020 Hb_007123_010 Hb_007123_010 Hb_021576_130--Hb_007123_010 Hb_003454_050 Hb_003454_050 Hb_021576_130--Hb_003454_050 Hb_002205_150 Hb_002205_150 Hb_021576_130--Hb_002205_150 Hb_006922_020 Hb_006922_020 Hb_021576_130--Hb_006922_020 Hb_004228_070--Hb_002205_150 Hb_004228_070--Hb_003454_050 Hb_004228_070--Hb_007123_010 Hb_044653_050 Hb_044653_050 Hb_004228_070--Hb_044653_050 Hb_004228_070--Hb_006922_020 Hb_009393_090 Hb_009393_090 Hb_039075_020--Hb_009393_090 Hb_003873_020 Hb_003873_020 Hb_039075_020--Hb_003873_020 Hb_001366_290 Hb_001366_290 Hb_039075_020--Hb_001366_290 Hb_039075_020--Hb_006922_020 Hb_002490_060 Hb_002490_060 Hb_039075_020--Hb_002490_060 Hb_007123_010--Hb_006922_020 Hb_000103_370 Hb_000103_370 Hb_007123_010--Hb_000103_370 Hb_054926_010 Hb_054926_010 Hb_007123_010--Hb_054926_010 Hb_007123_010--Hb_002490_060 Hb_106089_010 Hb_106089_010 Hb_003454_050--Hb_106089_010 Hb_003454_050--Hb_002205_150 Hb_142026_010 Hb_142026_010 Hb_003454_050--Hb_142026_010 Hb_002902_040 Hb_002902_040 Hb_003454_050--Hb_002902_040 Hb_026240_020 Hb_026240_020 Hb_003454_050--Hb_026240_020 Hb_002205_150--Hb_142026_010 Hb_012539_100 Hb_012539_100 Hb_002205_150--Hb_012539_100 Hb_002205_150--Hb_002902_040 Hb_004634_030 Hb_004634_030 Hb_002205_150--Hb_004634_030 Hb_006922_020--Hb_002490_060 Hb_000627_040 Hb_000627_040 Hb_006922_020--Hb_000627_040 Hb_002053_180 Hb_002053_180 Hb_006922_020--Hb_002053_180 Hb_006922_020--Hb_000103_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.56196 9.38806 11.1534 0.0475004 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0834978 1.69627 6.58444

CAGE analysis