Hb_021576_140

Information

Type -
Description -
Location Contig21576: 73464-75156
Sequence    

Annotation

kegg
ID rcu:RCOM_0920940
description transcription factor, putative
nr
ID XP_012076434.1
description PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like [Jatropha curcas]
swissprot
ID Q6NQ99
description Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION OS=Arabidopsis thaliana GN=POLAR PE=2 SV=1
trembl
ID A0A067KBK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07088 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22325: 73649-74331 , PASA_asmbl_22327: 74847-75086
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021576_140 0.0 - - PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like [Jatropha curcas]
2 Hb_005203_020 0.1296663281 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
3 Hb_178127_010 0.1337959577 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
4 Hb_001369_770 0.1377643926 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
5 Hb_012038_010 0.1440235603 - - phospholipid-transporting atpase, putative [Ricinus communis]
6 Hb_000152_640 0.1446444864 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
7 Hb_000123_350 0.1473167376 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
8 Hb_012725_040 0.1485350269 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
9 Hb_002942_110 0.1490917058 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
10 Hb_018301_010 0.1508779275 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
11 Hb_001865_060 0.1518688053 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
12 Hb_001565_020 0.1520017097 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial, partial [Jatropha curcas]
13 Hb_000120_520 0.153700984 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
14 Hb_128695_030 0.1541692117 - - heat shock protein, putative [Ricinus communis]
15 Hb_001231_080 0.1558320609 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
16 Hb_000836_370 0.1559959077 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
17 Hb_003155_020 0.1568558744 - - Rpp4C3 [Medicago truncatula]
18 Hb_012226_010 0.1575630074 - - PREDICTED: protein DGCR14 [Jatropha curcas]
19 Hb_000599_130 0.1588934428 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
20 Hb_005000_300 0.1600717736 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_021576_140 Hb_021576_140 Hb_005203_020 Hb_005203_020 Hb_021576_140--Hb_005203_020 Hb_178127_010 Hb_178127_010 Hb_021576_140--Hb_178127_010 Hb_001369_770 Hb_001369_770 Hb_021576_140--Hb_001369_770 Hb_012038_010 Hb_012038_010 Hb_021576_140--Hb_012038_010 Hb_000152_640 Hb_000152_640 Hb_021576_140--Hb_000152_640 Hb_000123_350 Hb_000123_350 Hb_021576_140--Hb_000123_350 Hb_005203_020--Hb_001369_770 Hb_127599_010 Hb_127599_010 Hb_005203_020--Hb_127599_010 Hb_000120_520 Hb_000120_520 Hb_005203_020--Hb_000120_520 Hb_000123_330 Hb_000123_330 Hb_005203_020--Hb_000123_330 Hb_000363_370 Hb_000363_370 Hb_005203_020--Hb_000363_370 Hb_012725_040 Hb_012725_040 Hb_005203_020--Hb_012725_040 Hb_001565_020 Hb_001565_020 Hb_178127_010--Hb_001565_020 Hb_128695_030 Hb_128695_030 Hb_178127_010--Hb_128695_030 Hb_005000_300 Hb_005000_300 Hb_178127_010--Hb_005000_300 Hb_000120_420 Hb_000120_420 Hb_178127_010--Hb_000120_420 Hb_018301_010 Hb_018301_010 Hb_178127_010--Hb_018301_010 Hb_011909_060 Hb_011909_060 Hb_178127_010--Hb_011909_060 Hb_002942_110 Hb_002942_110 Hb_001369_770--Hb_002942_110 Hb_000538_190 Hb_000538_190 Hb_001369_770--Hb_000538_190 Hb_000599_130 Hb_000599_130 Hb_001369_770--Hb_000599_130 Hb_020178_050 Hb_020178_050 Hb_001369_770--Hb_020178_050 Hb_004195_120 Hb_004195_120 Hb_001369_770--Hb_004195_120 Hb_044653_020 Hb_044653_020 Hb_012038_010--Hb_044653_020 Hb_009674_080 Hb_009674_080 Hb_012038_010--Hb_009674_080 Hb_004324_060 Hb_004324_060 Hb_012038_010--Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_012038_010--Hb_003895_020 Hb_012038_010--Hb_002942_110 Hb_000526_060 Hb_000526_060 Hb_012038_010--Hb_000526_060 Hb_000152_640--Hb_000120_520 Hb_005054_310 Hb_005054_310 Hb_000152_640--Hb_005054_310 Hb_000056_300 Hb_000056_300 Hb_000152_640--Hb_000056_300 Hb_000152_640--Hb_005203_020 Hb_167381_020 Hb_167381_020 Hb_000152_640--Hb_167381_020 Hb_000836_370 Hb_000836_370 Hb_000152_640--Hb_000836_370 Hb_000896_060 Hb_000896_060 Hb_000123_350--Hb_000896_060 Hb_002485_040 Hb_002485_040 Hb_000123_350--Hb_002485_040 Hb_014834_060 Hb_014834_060 Hb_000123_350--Hb_014834_060 Hb_000123_350--Hb_000526_060 Hb_003060_090 Hb_003060_090 Hb_000123_350--Hb_003060_090 Hb_012082_010 Hb_012082_010 Hb_000123_350--Hb_012082_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23457 5.75582 1.18825 1.3877 2.06236 1.61939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0818756 0.515235 0.479052 1.16115 0.399695

CAGE analysis