Hb_021576_150

Information

Type -
Description -
Location Contig21576: 79081-88658
Sequence    

Annotation

kegg
ID rcu:RCOM_0920950
description DNA binding protein, putative
nr
ID XP_012076436.1
description PREDICTED: formin-like protein 18 [Jatropha curcas]
swissprot
ID Q9SK28
description Formin-like protein 18 OS=Arabidopsis thaliana GN=FH18 PE=2 SV=2
trembl
ID A0A067KES4
description Formin-like protein OS=Jatropha curcas GN=JCGZ_07089 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22328: 78796-78955 , PASA_asmbl_22331: 82557-82705 , PASA_asmbl_22332: 83344-85542 , PASA_asmbl_22333: 85642-89092
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021576_150 0.0 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
2 Hb_000003_680 0.0812807178 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
3 Hb_001799_160 0.0854788693 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_001191_080 0.0910055486 - - protein with unknown function [Ricinus communis]
5 Hb_012286_020 0.0920809082 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
6 Hb_000566_050 0.0953529088 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
7 Hb_000787_080 0.0965396694 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
8 Hb_061256_010 0.0970331497 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
9 Hb_004003_030 0.097366265 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000137_010 0.0985549733 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
11 Hb_004712_190 0.0989170326 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
12 Hb_003498_100 0.1003061004 - - component of oligomeric golgi complex, putative [Ricinus communis]
13 Hb_000926_200 0.1003588081 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
14 Hb_000318_220 0.1007720715 - - conserved hypothetical protein [Ricinus communis]
15 Hb_027506_040 0.1009335979 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
16 Hb_000680_120 0.1013619012 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
17 Hb_014497_100 0.1015959499 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
18 Hb_000163_260 0.1023316238 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
19 Hb_000120_890 0.1030863535 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
20 Hb_005977_030 0.1049030403 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]

Gene co-expression network

sample Hb_021576_150 Hb_021576_150 Hb_000003_680 Hb_000003_680 Hb_021576_150--Hb_000003_680 Hb_001799_160 Hb_001799_160 Hb_021576_150--Hb_001799_160 Hb_001191_080 Hb_001191_080 Hb_021576_150--Hb_001191_080 Hb_012286_020 Hb_012286_020 Hb_021576_150--Hb_012286_020 Hb_000566_050 Hb_000566_050 Hb_021576_150--Hb_000566_050 Hb_000787_080 Hb_000787_080 Hb_021576_150--Hb_000787_080 Hb_000003_680--Hb_012286_020 Hb_000003_680--Hb_000787_080 Hb_087313_010 Hb_087313_010 Hb_000003_680--Hb_087313_010 Hb_002218_020 Hb_002218_020 Hb_000003_680--Hb_002218_020 Hb_102948_010 Hb_102948_010 Hb_000003_680--Hb_102948_010 Hb_000318_220 Hb_000318_220 Hb_001799_160--Hb_000318_220 Hb_003498_100 Hb_003498_100 Hb_001799_160--Hb_003498_100 Hb_000120_890 Hb_000120_890 Hb_001799_160--Hb_000120_890 Hb_001504_010 Hb_001504_010 Hb_001799_160--Hb_001504_010 Hb_007483_070 Hb_007483_070 Hb_001799_160--Hb_007483_070 Hb_001053_190 Hb_001053_190 Hb_001799_160--Hb_001053_190 Hb_007741_130 Hb_007741_130 Hb_001191_080--Hb_007741_130 Hb_004712_190 Hb_004712_190 Hb_001191_080--Hb_004712_190 Hb_000926_200 Hb_000926_200 Hb_001191_080--Hb_000926_200 Hb_014231_020 Hb_014231_020 Hb_001191_080--Hb_014231_020 Hb_005245_120 Hb_005245_120 Hb_001191_080--Hb_005245_120 Hb_012286_020--Hb_000566_050 Hb_012286_020--Hb_002218_020 Hb_012286_020--Hb_102948_010 Hb_000086_270 Hb_000086_270 Hb_012286_020--Hb_000086_270 Hb_004003_030 Hb_004003_030 Hb_000566_050--Hb_004003_030 Hb_000566_050--Hb_001799_160 Hb_171554_010 Hb_171554_010 Hb_000566_050--Hb_171554_010 Hb_004032_320 Hb_004032_320 Hb_000566_050--Hb_004032_320 Hb_001766_070 Hb_001766_070 Hb_000787_080--Hb_001766_070 Hb_000258_420 Hb_000258_420 Hb_000787_080--Hb_000258_420 Hb_000815_310 Hb_000815_310 Hb_000787_080--Hb_000815_310 Hb_033152_090 Hb_033152_090 Hb_000787_080--Hb_033152_090 Hb_000137_010 Hb_000137_010 Hb_000787_080--Hb_000137_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04944 2.57373 5.91046 3.84454 0.993247 1.31317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.75773 2.01907 1.83147 1.33741 2.7983

CAGE analysis