Hb_021576_160

Information

Type transcription factor
Description TF Family: WRKY
Location Contig21576: 89434-98711
Sequence    

Annotation

kegg
ID pop:POPTR_0018s02470g
description POPTRDRAFT_669155; hypothetical protein
nr
ID XP_002324327.1
description putative WRKY transcription factor family protein [Populus trichocarpa]
swissprot
ID Q9SAH7
description Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1
trembl
ID B9IL50
description Putative WRKY transcription factor family protein OS=Populus trichocarpa GN=POPTR_0018s02470g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22334: 89401-90785 , PASA_asmbl_22335: 97209-98718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021576_160 0.0 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
2 Hb_003427_020 0.0741345015 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
3 Hb_001221_050 0.0747096642 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
4 Hb_006153_020 0.0937484579 - - vacuolar invertase [Manihot esculenta]
5 Hb_001333_030 0.0940589144 - - Abscisic acid 8'-hydroxylase 1 [Theobroma cacao]
6 Hb_005946_200 0.1005085085 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
7 Hb_029622_090 0.1016605819 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 2-like [Jatropha curcas]
8 Hb_004109_110 0.1026656207 - - dioxygenase family protein [Populus trichocarpa]
9 Hb_001022_070 0.1168982685 - - cell wall invertase [Manihot esculenta]
10 Hb_001610_070 0.1181912934 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]
11 Hb_000028_330 0.1212464301 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
12 Hb_000186_320 0.1212969701 - - receptor protein kinase, putative [Ricinus communis]
13 Hb_002804_070 0.1223973329 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
14 Hb_004324_100 0.1226398461 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
15 Hb_000047_010 0.124083381 - - PREDICTED: expansin-like A1 [Jatropha curcas]
16 Hb_011915_020 0.1255448763 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Jatropha curcas]
17 Hb_001518_030 0.126962218 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
18 Hb_011028_040 0.1284432595 - - receptor serine/threonine kinase, putative [Ricinus communis]
19 Hb_153180_010 0.1318558429 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
20 Hb_001663_090 0.1320552374 - - ribonuclease t2, putative [Ricinus communis]

Gene co-expression network

sample Hb_021576_160 Hb_021576_160 Hb_003427_020 Hb_003427_020 Hb_021576_160--Hb_003427_020 Hb_001221_050 Hb_001221_050 Hb_021576_160--Hb_001221_050 Hb_006153_020 Hb_006153_020 Hb_021576_160--Hb_006153_020 Hb_001333_030 Hb_001333_030 Hb_021576_160--Hb_001333_030 Hb_005946_200 Hb_005946_200 Hb_021576_160--Hb_005946_200 Hb_029622_090 Hb_029622_090 Hb_021576_160--Hb_029622_090 Hb_003427_020--Hb_001221_050 Hb_001022_070 Hb_001022_070 Hb_003427_020--Hb_001022_070 Hb_002804_070 Hb_002804_070 Hb_003427_020--Hb_002804_070 Hb_000000_320 Hb_000000_320 Hb_003427_020--Hb_000000_320 Hb_003427_020--Hb_005946_200 Hb_001221_050--Hb_005946_200 Hb_001221_050--Hb_006153_020 Hb_001221_050--Hb_002804_070 Hb_001221_050--Hb_001333_030 Hb_006153_020--Hb_005946_200 Hb_004109_110 Hb_004109_110 Hb_006153_020--Hb_004109_110 Hb_006002_020 Hb_006002_020 Hb_006153_020--Hb_006002_020 Hb_006153_020--Hb_001333_030 Hb_011028_040 Hb_011028_040 Hb_001333_030--Hb_011028_040 Hb_001333_030--Hb_003427_020 Hb_001333_030--Hb_001022_070 Hb_002303_050 Hb_002303_050 Hb_005946_200--Hb_002303_050 Hb_005946_200--Hb_002804_070 Hb_005946_200--Hb_001022_070 Hb_002811_320 Hb_002811_320 Hb_005946_200--Hb_002811_320 Hb_001663_090 Hb_001663_090 Hb_029622_090--Hb_001663_090 Hb_000028_330 Hb_000028_330 Hb_029622_090--Hb_000028_330 Hb_002048_070 Hb_002048_070 Hb_029622_090--Hb_002048_070 Hb_011915_020 Hb_011915_020 Hb_029622_090--Hb_011915_020 Hb_004324_100 Hb_004324_100 Hb_029622_090--Hb_004324_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 15.0658 14.9116 23.6501 0 0.0201707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.213413 0.14926 0 0.957953 4.25271

CAGE analysis