Hb_021583_010

Information

Type -
Description -
Location Contig21583: 2000-2573
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021583_010 0.0 - - -
2 Hb_083569_010 0.2134417606 - - -
3 Hb_094101_010 0.2367027911 - - hypothetical protein JCGZ_18414 [Jatropha curcas]
4 Hb_009780_090 0.2590662878 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
5 Hb_003311_050 0.2671267901 - - PREDICTED: two-pore potassium channel 1-like [Jatropha curcas]
6 Hb_019282_010 0.3009893148 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
7 Hb_001427_180 0.3032910377 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
8 Hb_000953_060 0.3103741609 - - PREDICTED: putative phytosulfokines 6 [Vitis vinifera]
9 Hb_002235_140 0.311846892 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010874_030 0.3174102545 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
11 Hb_002904_090 0.3174946175 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420-like [Vitis vinifera]
12 Hb_080530_020 0.322030436 - - -
13 Hb_139859_010 0.3272141344 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
14 Hb_000200_040 0.3276307726 - - -
15 Hb_000808_240 0.3288986661 - - -
16 Hb_000563_220 0.3295959229 - - hypothetical protein VITISV_004111 [Vitis vinifera]
17 Hb_003609_010 0.329881107 - - -
18 Hb_000861_030 0.3327177423 - - -
19 Hb_001396_150 0.3329261076 transcription factor TF Family: M-type hypothetical protein POPTR_0001s13660g [Populus trichocarpa]
20 Hb_003061_010 0.3335300226 - - hypothetical protein SORBIDRAFT_01g039870 [Sorghum bicolor]

Gene co-expression network

sample Hb_021583_010 Hb_021583_010 Hb_083569_010 Hb_083569_010 Hb_021583_010--Hb_083569_010 Hb_094101_010 Hb_094101_010 Hb_021583_010--Hb_094101_010 Hb_009780_090 Hb_009780_090 Hb_021583_010--Hb_009780_090 Hb_003311_050 Hb_003311_050 Hb_021583_010--Hb_003311_050 Hb_019282_010 Hb_019282_010 Hb_021583_010--Hb_019282_010 Hb_001427_180 Hb_001427_180 Hb_021583_010--Hb_001427_180 Hb_083569_010--Hb_094101_010 Hb_000563_220 Hb_000563_220 Hb_083569_010--Hb_000563_220 Hb_083569_010--Hb_009780_090 Hb_003609_010 Hb_003609_010 Hb_083569_010--Hb_003609_010 Hb_083569_010--Hb_003311_050 Hb_001414_130 Hb_001414_130 Hb_094101_010--Hb_001414_130 Hb_094101_010--Hb_003311_050 Hb_094101_010--Hb_009780_090 Hb_000928_150 Hb_000928_150 Hb_094101_010--Hb_000928_150 Hb_009780_090--Hb_003311_050 Hb_009780_090--Hb_000928_150 Hb_010874_030 Hb_010874_030 Hb_009780_090--Hb_010874_030 Hb_003311_050--Hb_000928_150 Hb_003311_050--Hb_010874_030 Hb_003656_120 Hb_003656_120 Hb_003311_050--Hb_003656_120 Hb_012423_010 Hb_012423_010 Hb_003311_050--Hb_012423_010 Hb_058381_010 Hb_058381_010 Hb_019282_010--Hb_058381_010 Hb_000200_040 Hb_000200_040 Hb_019282_010--Hb_000200_040 Hb_012807_080 Hb_012807_080 Hb_019282_010--Hb_012807_080 Hb_002411_130 Hb_002411_130 Hb_019282_010--Hb_002411_130 Hb_000159_110 Hb_000159_110 Hb_019282_010--Hb_000159_110 Hb_003376_070 Hb_003376_070 Hb_019282_010--Hb_003376_070 Hb_001513_020 Hb_001513_020 Hb_001427_180--Hb_001513_020 Hb_000352_130 Hb_000352_130 Hb_001427_180--Hb_000352_130 Hb_001427_180--Hb_019282_010 Hb_176117_010 Hb_176117_010 Hb_001427_180--Hb_176117_010 Hb_005016_150 Hb_005016_150 Hb_001427_180--Hb_005016_150 Hb_002904_090 Hb_002904_090 Hb_001427_180--Hb_002904_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0629335 0.108477 0 0 0.122751 0.386209
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.116094 0 0.0970913 0

CAGE analysis