Hb_021596_050

Information

Type -
Description -
Location Contig21596: 32966-33394
Sequence    

Annotation

kegg
ID rcu:RCOM_0679320
description hypothetical protein
nr
ID XP_002516848.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RSX9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0679320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021596_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009421_060 0.0696170851 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
3 Hb_000083_200 0.0816663121 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001500_020 0.0830822175 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_180088_010 0.0906070637 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_112950_010 0.0968502485 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
7 Hb_001579_160 0.0970242958 - - PREDICTED: kininogen-1-like [Jatropha curcas]
8 Hb_001722_110 0.0993848854 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
9 Hb_007919_010 0.0999922514 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001349_040 0.1004303458 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
11 Hb_003175_120 0.1005447967 - - PREDICTED: uncharacterized protein LOC105141472 isoform X1 [Populus euphratica]
12 Hb_006351_050 0.1014372208 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
13 Hb_000599_160 0.1020716504 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
14 Hb_001541_170 0.1048939555 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
15 Hb_006153_140 0.1066453634 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
16 Hb_135757_030 0.1066949352 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
17 Hb_003598_050 0.108729703 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
18 Hb_009079_020 0.1094767642 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
19 Hb_000172_450 0.1095449097 - - Uncharacterized protein TCM_001203 [Theobroma cacao]
20 Hb_002260_140 0.1168764777 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_021596_050 Hb_021596_050 Hb_009421_060 Hb_009421_060 Hb_021596_050--Hb_009421_060 Hb_000083_200 Hb_000083_200 Hb_021596_050--Hb_000083_200 Hb_001500_020 Hb_001500_020 Hb_021596_050--Hb_001500_020 Hb_180088_010 Hb_180088_010 Hb_021596_050--Hb_180088_010 Hb_112950_010 Hb_112950_010 Hb_021596_050--Hb_112950_010 Hb_001579_160 Hb_001579_160 Hb_021596_050--Hb_001579_160 Hb_009421_060--Hb_001579_160 Hb_009421_060--Hb_000083_200 Hb_009421_060--Hb_180088_010 Hb_009421_060--Hb_001500_020 Hb_001541_170 Hb_001541_170 Hb_009421_060--Hb_001541_170 Hb_001349_040 Hb_001349_040 Hb_000083_200--Hb_001349_040 Hb_000083_200--Hb_112950_010 Hb_000497_030 Hb_000497_030 Hb_000083_200--Hb_000497_030 Hb_006717_060 Hb_006717_060 Hb_000083_200--Hb_006717_060 Hb_000699_220 Hb_000699_220 Hb_000083_200--Hb_000699_220 Hb_006351_050 Hb_006351_050 Hb_001500_020--Hb_006351_050 Hb_001500_020--Hb_180088_010 Hb_003598_050 Hb_003598_050 Hb_001500_020--Hb_003598_050 Hb_001500_020--Hb_112950_010 Hb_135757_030 Hb_135757_030 Hb_001500_020--Hb_135757_030 Hb_000172_450 Hb_000172_450 Hb_001500_020--Hb_000172_450 Hb_180088_010--Hb_006351_050 Hb_007919_010 Hb_007919_010 Hb_180088_010--Hb_007919_010 Hb_180088_010--Hb_112950_010 Hb_180088_010--Hb_003598_050 Hb_112950_010--Hb_003598_050 Hb_002686_220 Hb_002686_220 Hb_112950_010--Hb_002686_220 Hb_112950_010--Hb_001349_040 Hb_004158_040 Hb_004158_040 Hb_001579_160--Hb_004158_040 Hb_001579_160--Hb_001541_170 Hb_001454_350 Hb_001454_350 Hb_001579_160--Hb_001454_350 Hb_001722_110 Hb_001722_110 Hb_001579_160--Hb_001722_110 Hb_001579_160--Hb_180088_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.148108 3.69993 4.48312 36.2151 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.174842 0.13733 0 0.581407 7.40372

CAGE analysis