Hb_021596_070

Information

Type rubber biosynthesis
Description Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase
Location Contig21596: 47203-51595
Sequence    

Annotation

kegg
ID rcu:RCOM_0679170
description 1-deoxyxylulose-5-phosphate synthase, putative (EC:2.2.1.7)
nr
ID BAF98288.1
description 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
swissprot
ID O78328
description Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1
trembl
ID A9ZN06
description 1-deoxy-D-xylulose 5-phosphate synthase OS=Hevea brasiliensis GN=HbDXS1 PE=2 SV=1
Gene Ontology
ID GO:0008661
description probable 1-deoxy-d-xylulose-5-phosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021596_070 0.0 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
2 Hb_008667_020 0.0630506096 - - PREDICTED: uncharacterized protein LOC101299609 [Fragaria vesca subsp. vesca]
3 Hb_007433_020 0.0850270917 - - hypothetical protein VITISV_005320 [Vitis vinifera]
4 Hb_010962_030 0.0885209147 - - kinase, putative [Ricinus communis]
5 Hb_011054_030 0.0892574939 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
6 Hb_007371_020 0.0938361686 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
7 Hb_111985_060 0.0950542245 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
8 Hb_000123_310 0.1053400397 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
9 Hb_004712_140 0.106617166 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
10 Hb_005054_300 0.1141637355 - - aquaporin [Hevea brasiliensis]
11 Hb_041290_030 0.1210953943 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
12 Hb_009778_030 0.1250603739 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
13 Hb_000395_030 0.1256528279 - - oligopeptide transporter, putative [Ricinus communis]
14 Hb_000146_110 0.1289180142 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
15 Hb_000521_290 0.1291215711 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
16 Hb_000039_100 0.1300411442 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
17 Hb_012702_010 0.1306425196 - - PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]
18 Hb_000338_030 0.1311142632 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]
19 Hb_002284_020 0.1321336189 - - PREDICTED: probable inorganic phosphate transporter 1-9 [Jatropha curcas]
20 Hb_002085_070 0.1322019556 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_021596_070 Hb_021596_070 Hb_008667_020 Hb_008667_020 Hb_021596_070--Hb_008667_020 Hb_007433_020 Hb_007433_020 Hb_021596_070--Hb_007433_020 Hb_010962_030 Hb_010962_030 Hb_021596_070--Hb_010962_030 Hb_011054_030 Hb_011054_030 Hb_021596_070--Hb_011054_030 Hb_007371_020 Hb_007371_020 Hb_021596_070--Hb_007371_020 Hb_111985_060 Hb_111985_060 Hb_021596_070--Hb_111985_060 Hb_008667_020--Hb_007433_020 Hb_008667_020--Hb_011054_030 Hb_008667_020--Hb_111985_060 Hb_008667_020--Hb_007371_020 Hb_004712_140 Hb_004712_140 Hb_008667_020--Hb_004712_140 Hb_019961_010 Hb_019961_010 Hb_007433_020--Hb_019961_010 Hb_001411_150 Hb_001411_150 Hb_007433_020--Hb_001411_150 Hb_007433_020--Hb_011054_030 Hb_007433_020--Hb_111985_060 Hb_010962_030--Hb_007371_020 Hb_000146_110 Hb_000146_110 Hb_010962_030--Hb_000146_110 Hb_041290_030 Hb_041290_030 Hb_010962_030--Hb_041290_030 Hb_000003_620 Hb_000003_620 Hb_010962_030--Hb_000003_620 Hb_009778_030 Hb_009778_030 Hb_010962_030--Hb_009778_030 Hb_000039_100 Hb_000039_100 Hb_011054_030--Hb_000039_100 Hb_005054_300 Hb_005054_300 Hb_011054_030--Hb_005054_300 Hb_011054_030--Hb_111985_060 Hb_029866_140 Hb_029866_140 Hb_011054_030--Hb_029866_140 Hb_007371_020--Hb_000003_620 Hb_007371_020--Hb_000146_110 Hb_007371_020--Hb_009778_030 Hb_010327_010 Hb_010327_010 Hb_007371_020--Hb_010327_010 Hb_003090_060 Hb_003090_060 Hb_111985_060--Hb_003090_060 Hb_111985_060--Hb_005054_300 Hb_002621_030 Hb_002621_030 Hb_111985_060--Hb_002621_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175299 37.9605 4.84966 4.00443 0.0943077 0.198889
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0174039 0.0684748 0.0261152 6.80265 2.27131

CAGE analysis