Hb_021596_090

Information

Type -
Description -
Location Contig21596: 57610-60962
Sequence    

Annotation

kegg
ID rcu:RCOM_0679150
description NADH dehydrogenase, putative
nr
ID XP_012069439.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]
swissprot
ID Q8LGE7
description NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis thaliana GN=At5g18800 PE=1 SV=1
trembl
ID B9RSX2
description NADH dehydrogenase, putative OS=Ricinus communis GN=RCOM_0679150 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22351: 56480-57377 , PASA_asmbl_22352: 57755-61036
cDNA
(Sanger)
(ID:Location)		 008_N12.ab1: 57758-60769 , 021_P08.ab1: 57758-60771 , 032_A10.ab1: 57788-60773 , 033_P14.ab1: 57776-60743

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021596_090 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]
2 Hb_000046_100 0.0641807214 - - NADH dehydrogenase, putative [Ricinus communis]
3 Hb_007044_120 0.0652179263 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
4 Hb_143766_010 0.0766764745 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
5 Hb_000103_320 0.0773221405 - - Stem-specific protein TSJT1, putative [Ricinus communis]
6 Hb_000638_250 0.0829588528 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_034299_050 0.084054554 - - hypothetical protein CICLE_v10031248mg [Citrus clementina]
8 Hb_003581_150 0.0858244706 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]
9 Hb_010175_040 0.0900693557 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
10 Hb_118419_010 0.0903776753 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
11 Hb_002995_020 0.0925049565 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
12 Hb_000934_250 0.0937409091 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
13 Hb_007441_330 0.0940468684 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
14 Hb_028872_080 0.0942005204 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
15 Hb_033594_150 0.095325865 - - unknown [Lotus japonicus]
16 Hb_000201_120 0.0956077923 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
17 Hb_001221_210 0.0956576177 - - thiF family protein [Populus trichocarpa]
18 Hb_006831_120 0.0965983589 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
19 Hb_129204_030 0.0969143342 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
20 Hb_000668_040 0.0980961959 - - PREDICTED: random slug protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_021596_090 Hb_021596_090 Hb_000046_100 Hb_000046_100 Hb_021596_090--Hb_000046_100 Hb_007044_120 Hb_007044_120 Hb_021596_090--Hb_007044_120 Hb_143766_010 Hb_143766_010 Hb_021596_090--Hb_143766_010 Hb_000103_320 Hb_000103_320 Hb_021596_090--Hb_000103_320 Hb_000638_250 Hb_000638_250 Hb_021596_090--Hb_000638_250 Hb_034299_050 Hb_034299_050 Hb_021596_090--Hb_034299_050 Hb_000046_100--Hb_000103_320 Hb_000046_100--Hb_007044_120 Hb_006831_120 Hb_006831_120 Hb_000046_100--Hb_006831_120 Hb_001218_040 Hb_001218_040 Hb_000046_100--Hb_001218_040 Hb_028872_080 Hb_028872_080 Hb_000046_100--Hb_028872_080 Hb_007044_120--Hb_000638_250 Hb_000403_060 Hb_000403_060 Hb_007044_120--Hb_000403_060 Hb_148121_040 Hb_148121_040 Hb_007044_120--Hb_148121_040 Hb_000175_340 Hb_000175_340 Hb_007044_120--Hb_000175_340 Hb_000120_960 Hb_000120_960 Hb_007044_120--Hb_000120_960 Hb_007012_060 Hb_007012_060 Hb_143766_010--Hb_007012_060 Hb_004102_070 Hb_004102_070 Hb_143766_010--Hb_004102_070 Hb_027654_050 Hb_027654_050 Hb_143766_010--Hb_027654_050 Hb_010175_040 Hb_010175_040 Hb_143766_010--Hb_010175_040 Hb_009182_010 Hb_009182_010 Hb_143766_010--Hb_009182_010 Hb_000103_320--Hb_000638_250 Hb_000103_320--Hb_006831_120 Hb_003581_150 Hb_003581_150 Hb_000103_320--Hb_003581_150 Hb_152784_010 Hb_152784_010 Hb_000103_320--Hb_152784_010 Hb_001318_250 Hb_001318_250 Hb_000103_320--Hb_001318_250 Hb_007441_330 Hb_007441_330 Hb_000103_320--Hb_007441_330 Hb_000638_250--Hb_152784_010 Hb_000261_140 Hb_000261_140 Hb_000638_250--Hb_000261_140 Hb_000638_250--Hb_006831_120 Hb_004696_080 Hb_004696_080 Hb_000638_250--Hb_004696_080 Hb_004994_100 Hb_004994_100 Hb_034299_050--Hb_004994_100 Hb_000331_080 Hb_000331_080 Hb_034299_050--Hb_000331_080 Hb_008878_030 Hb_008878_030 Hb_034299_050--Hb_008878_030 Hb_000201_120 Hb_000201_120 Hb_034299_050--Hb_000201_120 Hb_000270_370 Hb_000270_370 Hb_034299_050--Hb_000270_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.0958 14.6099 45.7122 42.1688 36.8362 27.5748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.9879 90.9471 79.9188 36.4984 20.5119

CAGE analysis