Hb_021616_010

Information

Type -
Description -
Location Contig21616: 39415-40069
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021616_010 0.0 - - -
2 Hb_005483_010 0.1635994339 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
3 Hb_010142_080 0.180693429 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
4 Hb_005532_010 0.1900370029 - - -
5 Hb_174876_010 0.2260801136 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
6 Hb_013429_020 0.2276286925 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
7 Hb_008370_010 0.2346528157 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_004413_030 0.2377045077 - - Retrotransposon protein, putative [Theobroma cacao]
9 Hb_168311_010 0.2499714306 - - -
10 Hb_000139_440 0.2503056223 - - unnamed protein product [Coffea canephora]
11 Hb_000590_020 0.2511437998 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
12 Hb_047040_010 0.2516361918 - - integrase [Gossypium herbaceum]
13 Hb_022206_060 0.2527130506 - - -
14 Hb_090826_010 0.2533820445 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
15 Hb_030928_010 0.2541828655 - - -
16 Hb_181535_010 0.2543076165 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_000351_030 0.2547452429 - - putative NBS-LRR type disease resistance protein [Prunus persica]
18 Hb_139388_010 0.2548050721 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
19 Hb_009421_010 0.254860165 - - -
20 Hb_001110_020 0.2549060198 - - hypothetical protein JCGZ_03693 [Jatropha curcas]

Gene co-expression network

sample Hb_021616_010 Hb_021616_010 Hb_005483_010 Hb_005483_010 Hb_021616_010--Hb_005483_010 Hb_010142_080 Hb_010142_080 Hb_021616_010--Hb_010142_080 Hb_005532_010 Hb_005532_010 Hb_021616_010--Hb_005532_010 Hb_174876_010 Hb_174876_010 Hb_021616_010--Hb_174876_010 Hb_013429_020 Hb_013429_020 Hb_021616_010--Hb_013429_020 Hb_008370_010 Hb_008370_010 Hb_021616_010--Hb_008370_010 Hb_012286_070 Hb_012286_070 Hb_005483_010--Hb_012286_070 Hb_000450_140 Hb_000450_140 Hb_005483_010--Hb_000450_140 Hb_020818_010 Hb_020818_010 Hb_005483_010--Hb_020818_010 Hb_070247_010 Hb_070247_010 Hb_005483_010--Hb_070247_010 Hb_010760_010 Hb_010760_010 Hb_005483_010--Hb_010760_010 Hb_001545_250 Hb_001545_250 Hb_005483_010--Hb_001545_250 Hb_010142_080--Hb_005532_010 Hb_009421_010 Hb_009421_010 Hb_010142_080--Hb_009421_010 Hb_003226_290 Hb_003226_290 Hb_010142_080--Hb_003226_290 Hb_004413_030 Hb_004413_030 Hb_010142_080--Hb_004413_030 Hb_010142_080--Hb_013429_020 Hb_062244_010 Hb_062244_010 Hb_005532_010--Hb_062244_010 Hb_005532_010--Hb_009421_010 Hb_005532_010--Hb_004413_030 Hb_005532_010--Hb_005483_010 Hb_001534_170 Hb_001534_170 Hb_174876_010--Hb_001534_170 Hb_010417_010 Hb_010417_010 Hb_174876_010--Hb_010417_010 Hb_004157_110 Hb_004157_110 Hb_174876_010--Hb_004157_110 Hb_004208_100 Hb_004208_100 Hb_174876_010--Hb_004208_100 Hb_000009_070 Hb_000009_070 Hb_174876_010--Hb_000009_070 Hb_020580_010 Hb_020580_010 Hb_013429_020--Hb_020580_010 Hb_003321_020 Hb_003321_020 Hb_013429_020--Hb_003321_020 Hb_003117_040 Hb_003117_040 Hb_013429_020--Hb_003117_040 Hb_013429_020--Hb_009421_010 Hb_008370_010--Hb_009421_010 Hb_008370_010--Hb_005532_010 Hb_161929_010 Hb_161929_010 Hb_008370_010--Hb_161929_010 Hb_008370_010--Hb_010142_080 Hb_089173_010 Hb_089173_010 Hb_008370_010--Hb_089173_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.207614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.18149 0.349768 0

CAGE analysis