Hb_021650_010

Information

Type -
Description -
Location Contig21650: 2068-5799
Sequence    

Annotation

kegg
ID rcu:RCOM_0852170
description aberrant large forked product, putative
nr
ID KDP45399.1
description hypothetical protein JCGZ_09648 [Jatropha curcas]
swissprot
ID Q9SQK3
description Ankyrin repeat domain-containing protein EMB506, chloroplastic OS=Arabidopsis thaliana GN=EMB506 PE=1 SV=1
trembl
ID A0A067LLX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09648 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22381: 2159-5783 , PASA_asmbl_22382: 2757-5762
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021650_010 0.0 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
2 Hb_003752_070 0.0636146832 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
3 Hb_005162_110 0.0663594269 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
4 Hb_001232_150 0.0691128471 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
5 Hb_000051_060 0.0806011962 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000802_130 0.0812296979 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
7 Hb_001195_270 0.083553361 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
8 Hb_031042_060 0.0851643075 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_006787_090 0.0873504382 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
10 Hb_000640_160 0.0890956154 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
11 Hb_000284_130 0.0900790288 - - sodium-bile acid cotransporter, putative [Ricinus communis]
12 Hb_005731_110 0.0909686431 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
13 Hb_000613_120 0.0911753287 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
14 Hb_002150_140 0.0917384343 - - PREDICTED: girdin-like [Jatropha curcas]
15 Hb_003225_020 0.0944428391 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
16 Hb_010174_090 0.095997186 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
17 Hb_000663_020 0.0961642367 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
18 Hb_004994_080 0.0973302828 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_005389_170 0.0995421738 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
20 Hb_001660_120 0.1007592777 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_021650_010 Hb_021650_010 Hb_003752_070 Hb_003752_070 Hb_021650_010--Hb_003752_070 Hb_005162_110 Hb_005162_110 Hb_021650_010--Hb_005162_110 Hb_001232_150 Hb_001232_150 Hb_021650_010--Hb_001232_150 Hb_000051_060 Hb_000051_060 Hb_021650_010--Hb_000051_060 Hb_000802_130 Hb_000802_130 Hb_021650_010--Hb_000802_130 Hb_001195_270 Hb_001195_270 Hb_021650_010--Hb_001195_270 Hb_003752_070--Hb_001195_270 Hb_006787_090 Hb_006787_090 Hb_003752_070--Hb_006787_090 Hb_003752_070--Hb_005162_110 Hb_003752_070--Hb_000051_060 Hb_010174_090 Hb_010174_090 Hb_003752_070--Hb_010174_090 Hb_005946_040 Hb_005946_040 Hb_005162_110--Hb_005946_040 Hb_000003_170 Hb_000003_170 Hb_005162_110--Hb_000003_170 Hb_005731_110 Hb_005731_110 Hb_005162_110--Hb_005731_110 Hb_005162_110--Hb_000051_060 Hb_000445_070 Hb_000445_070 Hb_001232_150--Hb_000445_070 Hb_001232_150--Hb_000051_060 Hb_000640_160 Hb_000640_160 Hb_001232_150--Hb_000640_160 Hb_003225_020 Hb_003225_020 Hb_001232_150--Hb_003225_020 Hb_001232_150--Hb_005731_110 Hb_001935_100 Hb_001935_100 Hb_000051_060--Hb_001935_100 Hb_002876_220 Hb_002876_220 Hb_000051_060--Hb_002876_220 Hb_000613_120 Hb_000613_120 Hb_000802_130--Hb_000613_120 Hb_001430_020 Hb_001430_020 Hb_000802_130--Hb_001430_020 Hb_004109_260 Hb_004109_260 Hb_000802_130--Hb_004109_260 Hb_011861_050 Hb_011861_050 Hb_000802_130--Hb_011861_050 Hb_102948_010 Hb_102948_010 Hb_000802_130--Hb_102948_010 Hb_000663_020 Hb_000663_020 Hb_001195_270--Hb_000663_020 Hb_001195_270--Hb_005731_110 Hb_001195_270--Hb_005162_110 Hb_001195_270--Hb_000051_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0811 8.7397 36.4182 11.4493 12.7309 13.8089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.96057 9.7939 8.49289 7.06289 28.3318

CAGE analysis