Hb_021650_030

Information

Type -
Description -
Location Contig21650: 17352-24171
Sequence    

Annotation

kegg
ID rcu:RCOM_0852190
description nuclease, putative
nr
ID XP_012082129.1
description PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
swissprot
ID P64956
description Uncharacterized protein Mb2253c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb2253c PE=3 SV=1
trembl
ID A0A067LAB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09650 PE=4 SV=1
Gene Ontology
ID GO:0003676
description rnase h family isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22383: 17700-23277
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021650_030 0.0 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
2 Hb_000091_090 0.050869995 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
3 Hb_002411_200 0.055591233 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000086_570 0.0591683073 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
5 Hb_002078_450 0.0621804264 - - nuclear transport factor, putative [Ricinus communis]
6 Hb_014720_080 0.0671514756 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
7 Hb_001881_020 0.0675860271 - - clathrin binding protein, putative [Ricinus communis]
8 Hb_001671_020 0.0697908738 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
9 Hb_000205_270 0.0703280509 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
10 Hb_001718_100 0.0727254689 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
11 Hb_003020_230 0.0728226486 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
12 Hb_071736_020 0.0732684438 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
13 Hb_007672_010 0.0734664523 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
14 Hb_055062_030 0.0735362384 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
15 Hb_000371_080 0.0738077978 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
16 Hb_008289_060 0.0739163958 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
17 Hb_022250_040 0.0740655782 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
18 Hb_001427_120 0.0744090263 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
19 Hb_000376_050 0.0745541464 - - polyadenylate-binding protein, putative [Ricinus communis]
20 Hb_001243_050 0.0754838439 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]

Gene co-expression network

sample Hb_021650_030 Hb_021650_030 Hb_000091_090 Hb_000091_090 Hb_021650_030--Hb_000091_090 Hb_002411_200 Hb_002411_200 Hb_021650_030--Hb_002411_200 Hb_000086_570 Hb_000086_570 Hb_021650_030--Hb_000086_570 Hb_002078_450 Hb_002078_450 Hb_021650_030--Hb_002078_450 Hb_014720_080 Hb_014720_080 Hb_021650_030--Hb_014720_080 Hb_001881_020 Hb_001881_020 Hb_021650_030--Hb_001881_020 Hb_003151_050 Hb_003151_050 Hb_000091_090--Hb_003151_050 Hb_000091_090--Hb_000086_570 Hb_000091_090--Hb_002411_200 Hb_000091_090--Hb_001881_020 Hb_000983_100 Hb_000983_100 Hb_000091_090--Hb_000983_100 Hb_002411_200--Hb_000086_570 Hb_002411_200--Hb_014720_080 Hb_002411_200--Hb_001881_020 Hb_020178_070 Hb_020178_070 Hb_002411_200--Hb_020178_070 Hb_000086_570--Hb_002078_450 Hb_071736_020 Hb_071736_020 Hb_000086_570--Hb_071736_020 Hb_001427_120 Hb_001427_120 Hb_000086_570--Hb_001427_120 Hb_001718_100 Hb_001718_100 Hb_000086_570--Hb_001718_100 Hb_002078_450--Hb_071736_020 Hb_005686_110 Hb_005686_110 Hb_002078_450--Hb_005686_110 Hb_009711_030 Hb_009711_030 Hb_002078_450--Hb_009711_030 Hb_002078_450--Hb_001718_100 Hb_022250_040 Hb_022250_040 Hb_002078_450--Hb_022250_040 Hb_001722_100 Hb_001722_100 Hb_014720_080--Hb_001722_100 Hb_000025_120 Hb_000025_120 Hb_014720_080--Hb_000025_120 Hb_002540_030 Hb_002540_030 Hb_014720_080--Hb_002540_030 Hb_000146_020 Hb_000146_020 Hb_014720_080--Hb_000146_020 Hb_000834_270 Hb_000834_270 Hb_014720_080--Hb_000834_270 Hb_000671_150 Hb_000671_150 Hb_001881_020--Hb_000671_150 Hb_001881_020--Hb_020178_070 Hb_001881_020--Hb_000086_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.1028 15.8223 8.5994 11.9222 29.7853 40.9932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.7355 55.0943 50.4017 18.9637 7.1467

CAGE analysis