Hb_021854_010

Information

Type -
Description -
Location Contig21854: 165-4268
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021854_010 0.0 - - -
2 Hb_113119_010 0.1103155429 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_021854_020 0.1535460659 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
4 Hb_001310_050 0.1698227333 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
5 Hb_001365_010 0.173633908 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
6 Hb_001894_010 0.1742035669 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
7 Hb_005181_060 0.1798845698 - - ATP-citrate synthase, putative [Ricinus communis]
8 Hb_000120_740 0.1850429276 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
9 Hb_062013_010 0.1884081187 - - phosphoprotein phosphatase, putative [Ricinus communis]
10 Hb_000313_230 0.1886170197 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
11 Hb_003092_050 0.1927154369 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
12 Hb_000590_070 0.193906217 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
13 Hb_004807_050 0.1949362048 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
14 Hb_002893_190 0.1950458905 - - unnamed protein product [Coffea canephora]
15 Hb_000139_510 0.1972758574 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
16 Hb_008066_080 0.197764819 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
17 Hb_007527_040 0.1995536888 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
18 Hb_035834_010 0.2023060776 - - zinc finger protein, putative [Ricinus communis]
19 Hb_001365_020 0.2033177745 - - hypothetical protein PRUPE_ppa000927mg [Prunus persica]
20 Hb_000473_030 0.2036042837 - - hypothetical protein JCGZ_19297 [Jatropha curcas]

Gene co-expression network

sample Hb_021854_010 Hb_021854_010 Hb_113119_010 Hb_113119_010 Hb_021854_010--Hb_113119_010 Hb_021854_020 Hb_021854_020 Hb_021854_010--Hb_021854_020 Hb_001310_050 Hb_001310_050 Hb_021854_010--Hb_001310_050 Hb_001365_010 Hb_001365_010 Hb_021854_010--Hb_001365_010 Hb_001894_010 Hb_001894_010 Hb_021854_010--Hb_001894_010 Hb_005181_060 Hb_005181_060 Hb_021854_010--Hb_005181_060 Hb_000120_740 Hb_000120_740 Hb_113119_010--Hb_000120_740 Hb_113119_010--Hb_001894_010 Hb_000042_380 Hb_000042_380 Hb_113119_010--Hb_000042_380 Hb_113119_010--Hb_021854_020 Hb_005588_100 Hb_005588_100 Hb_113119_010--Hb_005588_100 Hb_021854_020--Hb_001310_050 Hb_010068_050 Hb_010068_050 Hb_021854_020--Hb_010068_050 Hb_006594_080 Hb_006594_080 Hb_021854_020--Hb_006594_080 Hb_008033_060 Hb_008033_060 Hb_021854_020--Hb_008033_060 Hb_000313_230 Hb_000313_230 Hb_001310_050--Hb_000313_230 Hb_002518_180 Hb_002518_180 Hb_001310_050--Hb_002518_180 Hb_003783_050 Hb_003783_050 Hb_001310_050--Hb_003783_050 Hb_030312_030 Hb_030312_030 Hb_001310_050--Hb_030312_030 Hb_036388_010 Hb_036388_010 Hb_001310_050--Hb_036388_010 Hb_004326_010 Hb_004326_010 Hb_001310_050--Hb_004326_010 Hb_001365_020 Hb_001365_020 Hb_001365_010--Hb_001365_020 Hb_000329_080 Hb_000329_080 Hb_001365_010--Hb_000329_080 Hb_000163_110 Hb_000163_110 Hb_001365_010--Hb_000163_110 Hb_000441_050 Hb_000441_050 Hb_001365_010--Hb_000441_050 Hb_001365_010--Hb_003783_050 Hb_035834_010 Hb_035834_010 Hb_001365_010--Hb_035834_010 Hb_003092_050 Hb_003092_050 Hb_001894_010--Hb_003092_050 Hb_005485_070 Hb_005485_070 Hb_001894_010--Hb_005485_070 Hb_000590_070 Hb_000590_070 Hb_001894_010--Hb_000590_070 Hb_002527_060 Hb_002527_060 Hb_001894_010--Hb_002527_060 Hb_001894_010--Hb_000120_740 Hb_001894_010--Hb_036388_010 Hb_005181_060--Hb_000590_070 Hb_005181_060--Hb_002527_060 Hb_002026_070 Hb_002026_070 Hb_005181_060--Hb_002026_070 Hb_005181_060--Hb_001894_010 Hb_005181_060--Hb_005485_070 Hb_000473_030 Hb_000473_030 Hb_005181_060--Hb_000473_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.301427 1.41789 5.09159 7.3047 1.07241 1.39204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.45797 9.05082 9.89929

CAGE analysis