Hb_021888_010

Information

Type -
Description -
Location Contig21888: 25588-29385
Sequence    

Annotation

kegg
ID rcu:RCOM_1033780
description Aspartic proteinase nepenthesin-2 precursor, putative
nr
ID XP_012078112.1
description PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Jatropha curcas]
swissprot
ID Q9LX20
description Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1
trembl
ID A0A067K9F2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11999 PE=3 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase-like protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22558: 25687-29210
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021888_010 0.0 - - PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Jatropha curcas]
2 Hb_001158_110 0.1203660253 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
3 Hb_006573_260 0.1240128114 - - -
4 Hb_001002_090 0.1292586996 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
5 Hb_002081_220 0.1310842197 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
6 Hb_009767_030 0.1317277487 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
7 Hb_000187_110 0.1360235202 - - PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]
8 Hb_055440_010 0.1432614368 - - protein binding protein, putative [Ricinus communis]
9 Hb_000086_720 0.1449946669 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
10 Hb_001532_060 0.1480425512 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
11 Hb_000161_230 0.1487680554 - - lactoylglutathione lyase, putative [Ricinus communis]
12 Hb_000696_250 0.1498597447 - - PREDICTED: patellin-6 [Jatropha curcas]
13 Hb_009070_030 0.1521734276 - - PREDICTED: mechanosensitive ion channel protein 10 [Jatropha curcas]
14 Hb_004525_110 0.1568685372 - - hypothetical protein POPTR_0007s12850g [Populus trichocarpa]
15 Hb_010053_010 0.1609171284 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
16 Hb_072997_010 0.1609563183 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
17 Hb_022092_050 0.1615673953 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]
18 Hb_005730_070 0.1648210972 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 8 [Jatropha curcas]
19 Hb_000057_180 0.1651081394 - - hypothetical protein POPTR_0001s18200g [Populus trichocarpa]
20 Hb_028927_010 0.1657234281 - - leucine-rich repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_021888_010 Hb_021888_010 Hb_001158_110 Hb_001158_110 Hb_021888_010--Hb_001158_110 Hb_006573_260 Hb_006573_260 Hb_021888_010--Hb_006573_260 Hb_001002_090 Hb_001002_090 Hb_021888_010--Hb_001002_090 Hb_002081_220 Hb_002081_220 Hb_021888_010--Hb_002081_220 Hb_009767_030 Hb_009767_030 Hb_021888_010--Hb_009767_030 Hb_000187_110 Hb_000187_110 Hb_021888_010--Hb_000187_110 Hb_000086_720 Hb_000086_720 Hb_001158_110--Hb_000086_720 Hb_001288_020 Hb_001288_020 Hb_001158_110--Hb_001288_020 Hb_001158_110--Hb_000187_110 Hb_001158_110--Hb_001002_090 Hb_072997_010 Hb_072997_010 Hb_001158_110--Hb_072997_010 Hb_028927_010 Hb_028927_010 Hb_006573_260--Hb_028927_010 Hb_000057_180 Hb_000057_180 Hb_006573_260--Hb_000057_180 Hb_002003_030 Hb_002003_030 Hb_006573_260--Hb_002003_030 Hb_116469_010 Hb_116469_010 Hb_006573_260--Hb_116469_010 Hb_106321_010 Hb_106321_010 Hb_006573_260--Hb_106321_010 Hb_055440_010 Hb_055440_010 Hb_001002_090--Hb_055440_010 Hb_000979_080 Hb_000979_080 Hb_001002_090--Hb_000979_080 Hb_001002_090--Hb_000187_110 Hb_001002_090--Hb_072997_010 Hb_001002_090--Hb_009767_030 Hb_001776_070 Hb_001776_070 Hb_001002_090--Hb_001776_070 Hb_010053_010 Hb_010053_010 Hb_002081_220--Hb_010053_010 Hb_164300_010 Hb_164300_010 Hb_002081_220--Hb_164300_010 Hb_001532_060 Hb_001532_060 Hb_002081_220--Hb_001532_060 Hb_000101_370 Hb_000101_370 Hb_002081_220--Hb_000101_370 Hb_002081_220--Hb_001158_110 Hb_000696_250 Hb_000696_250 Hb_009767_030--Hb_000696_250 Hb_001252_050 Hb_001252_050 Hb_009767_030--Hb_001252_050 Hb_009767_030--Hb_072997_010 Hb_009767_030--Hb_001776_070 Hb_000161_230 Hb_000161_230 Hb_000187_110--Hb_000161_230 Hb_000187_110--Hb_000979_080 Hb_003226_050 Hb_003226_050 Hb_000187_110--Hb_003226_050 Hb_000187_110--Hb_055440_010 Hb_001633_120 Hb_001633_120 Hb_000187_110--Hb_001633_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.08026 0.834788 6.27081 3.3921 0.0389249 0.0100466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0472599 0 0 8.23608 0.353193

CAGE analysis