Hb_021888_050

Information

Type -
Description -
Location Contig21888: 56582-57505
Sequence    

Annotation

kegg
ID pxb:103927128
description putative CCR4-associated factor 1 homolog 8
nr
ID XP_012065990.1
description PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
swissprot
ID Q60809
description CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1
trembl
ID A0A067L3Z3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26675 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ccr4-associated factor 1 homolog 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021888_050 0.0 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
2 Hb_115241_010 0.1311841943 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
3 Hb_000975_360 0.1356371161 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000948_080 0.1370751192 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
5 Hb_000649_240 0.1471945314 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
6 Hb_005568_080 0.1493081007 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001902_190 0.1551443086 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
8 Hb_000451_070 0.1580012138 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_010050_050 0.1623105165 - - PREDICTED: piezo-type mechanosensitive ion channel homolog isoform X2 [Jatropha curcas]
10 Hb_002341_020 0.1628058708 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
11 Hb_002636_080 0.1687591484 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
12 Hb_002042_130 0.1715164337 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
13 Hb_000096_130 0.171614635 - - hypothetical protein 23 [Hevea brasiliensis]
14 Hb_000432_040 0.1796847691 - - PREDICTED: remorin-like [Jatropha curcas]
15 Hb_000914_090 0.1811697029 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
16 Hb_009510_040 0.1839604151 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
17 Hb_165669_010 0.1846359058 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]
18 Hb_028487_020 0.184982056 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
19 Hb_013839_010 0.1872230068 - - Angio-associated migratory cell protein, putative [Ricinus communis]
20 Hb_001049_020 0.1910590482 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_021888_050 Hb_021888_050 Hb_115241_010 Hb_115241_010 Hb_021888_050--Hb_115241_010 Hb_000975_360 Hb_000975_360 Hb_021888_050--Hb_000975_360 Hb_000948_080 Hb_000948_080 Hb_021888_050--Hb_000948_080 Hb_000649_240 Hb_000649_240 Hb_021888_050--Hb_000649_240 Hb_005568_080 Hb_005568_080 Hb_021888_050--Hb_005568_080 Hb_001902_190 Hb_001902_190 Hb_021888_050--Hb_001902_190 Hb_115241_010--Hb_000975_360 Hb_001564_080 Hb_001564_080 Hb_115241_010--Hb_001564_080 Hb_001894_050 Hb_001894_050 Hb_115241_010--Hb_001894_050 Hb_001189_140 Hb_001189_140 Hb_115241_010--Hb_001189_140 Hb_005653_060 Hb_005653_060 Hb_115241_010--Hb_005653_060 Hb_002042_130 Hb_002042_130 Hb_000975_360--Hb_002042_130 Hb_000465_230 Hb_000465_230 Hb_000975_360--Hb_000465_230 Hb_000975_360--Hb_001189_140 Hb_000975_360--Hb_001894_050 Hb_000948_080--Hb_000975_360 Hb_000402_210 Hb_000402_210 Hb_000948_080--Hb_000402_210 Hb_110560_010 Hb_110560_010 Hb_000948_080--Hb_110560_010 Hb_002374_380 Hb_002374_380 Hb_000948_080--Hb_002374_380 Hb_028487_020 Hb_028487_020 Hb_000948_080--Hb_028487_020 Hb_000432_040 Hb_000432_040 Hb_000649_240--Hb_000432_040 Hb_000649_240--Hb_028487_020 Hb_002097_200 Hb_002097_200 Hb_000649_240--Hb_002097_200 Hb_006788_140 Hb_006788_140 Hb_000649_240--Hb_006788_140 Hb_000451_070 Hb_000451_070 Hb_000649_240--Hb_000451_070 Hb_000326_060 Hb_000326_060 Hb_005568_080--Hb_000326_060 Hb_033772_050 Hb_033772_050 Hb_005568_080--Hb_033772_050 Hb_009486_190 Hb_009486_190 Hb_005568_080--Hb_009486_190 Hb_009510_040 Hb_009510_040 Hb_005568_080--Hb_009510_040 Hb_003052_220 Hb_003052_220 Hb_005568_080--Hb_003052_220 Hb_004230_040 Hb_004230_040 Hb_001902_190--Hb_004230_040 Hb_000227_060 Hb_000227_060 Hb_001902_190--Hb_000227_060 Hb_001902_190--Hb_000451_070 Hb_001902_190--Hb_115241_010 Hb_002961_060 Hb_002961_060 Hb_001902_190--Hb_002961_060 Hb_001902_190--Hb_002042_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.677607 2.08204 0.242263 0.721517 0.406669 0.212334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.07105 2.20101 0.966952 1.25944 0.0895149

CAGE analysis