Hb_021888_060

Information

Type -
Description -
Location Contig21888: 61794-62464
Sequence    

Annotation

kegg
ID rcu:RCOM_1033830
description hypothetical protein
nr
ID XP_012078109.1
description PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9E1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11994 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22560: 61783-62737 , PASA_asmbl_22561: 61843-62641 , PASA_asmbl_22562: 54290-62755
cDNA
(Sanger)
(ID:Location)		 017_K09.ab1: 61786-62758 , 032_E12.ab1: 61783-62767 , 038_E11.ab1: 61843-62641 , 046_E03.ab1: 61767-62737

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021888_060 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Jatropha curcas]
2 Hb_002719_080 0.1393933906 - - hypothetical protein POPTR_0006s27920g [Populus trichocarpa]
3 Hb_006718_010 0.1590378227 - - PREDICTED: histone H2AX-like [Elaeis guineensis]
4 Hb_000648_020 0.1632080649 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
5 Hb_000364_210 0.1649948739 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
6 Hb_002025_300 0.1652370732 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
7 Hb_103118_020 0.1762958634 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
8 Hb_000025_240 0.1789706537 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
9 Hb_002518_290 0.181277039 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
10 Hb_009372_030 0.18347772 - - 50S ribosomal protein L6, putative [Ricinus communis]
11 Hb_003294_100 0.1859403268 - - hypothetical protein VITISV_009629 [Vitis vinifera]
12 Hb_005914_200 0.1870995306 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
13 Hb_001296_030 0.1875203623 - - PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]
14 Hb_008841_010 0.1880812416 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
15 Hb_001369_400 0.1933231782 - - PREDICTED: uncharacterized protein LOC105648609 [Jatropha curcas]
16 Hb_004223_260 0.1959759046 - - hypothetical protein F383_09277 [Gossypium arboreum]
17 Hb_000819_070 0.1971118723 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
18 Hb_000976_250 0.1987692513 - - -
19 Hb_006541_020 0.199907001 - - unknown [Lotus japonicus]
20 Hb_004754_070 0.203406257 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]

Gene co-expression network

sample Hb_021888_060 Hb_021888_060 Hb_002719_080 Hb_002719_080 Hb_021888_060--Hb_002719_080 Hb_006718_010 Hb_006718_010 Hb_021888_060--Hb_006718_010 Hb_000648_020 Hb_000648_020 Hb_021888_060--Hb_000648_020 Hb_000364_210 Hb_000364_210 Hb_021888_060--Hb_000364_210 Hb_002025_300 Hb_002025_300 Hb_021888_060--Hb_002025_300 Hb_103118_020 Hb_103118_020 Hb_021888_060--Hb_103118_020 Hb_005914_200 Hb_005914_200 Hb_002719_080--Hb_005914_200 Hb_026048_070 Hb_026048_070 Hb_002719_080--Hb_026048_070 Hb_002518_290 Hb_002518_290 Hb_002719_080--Hb_002518_290 Hb_002719_080--Hb_000648_020 Hb_002719_080--Hb_000364_210 Hb_000236_150 Hb_000236_150 Hb_002719_080--Hb_000236_150 Hb_006718_010--Hb_002025_300 Hb_000367_030 Hb_000367_030 Hb_006718_010--Hb_000367_030 Hb_006541_020 Hb_006541_020 Hb_006718_010--Hb_006541_020 Hb_000025_240 Hb_000025_240 Hb_006718_010--Hb_000025_240 Hb_004223_260 Hb_004223_260 Hb_006718_010--Hb_004223_260 Hb_007520_060 Hb_007520_060 Hb_006718_010--Hb_007520_060 Hb_000648_020--Hb_002025_300 Hb_124755_010 Hb_124755_010 Hb_000648_020--Hb_124755_010 Hb_001427_230 Hb_001427_230 Hb_000648_020--Hb_001427_230 Hb_012490_050 Hb_012490_050 Hb_000648_020--Hb_012490_050 Hb_000224_090 Hb_000224_090 Hb_000648_020--Hb_000224_090 Hb_002471_080 Hb_002471_080 Hb_000648_020--Hb_002471_080 Hb_001862_100 Hb_001862_100 Hb_000364_210--Hb_001862_100 Hb_000364_210--Hb_000648_020 Hb_003938_180 Hb_003938_180 Hb_000364_210--Hb_003938_180 Hb_002539_090 Hb_002539_090 Hb_000364_210--Hb_002539_090 Hb_003929_120 Hb_003929_120 Hb_000364_210--Hb_003929_120 Hb_002025_300--Hb_005914_200 Hb_002843_210 Hb_002843_210 Hb_002025_300--Hb_002843_210 Hb_012539_020 Hb_012539_020 Hb_002025_300--Hb_012539_020 Hb_002025_300--Hb_000025_240 Hb_103118_020--Hb_005914_200 Hb_000707_020 Hb_000707_020 Hb_103118_020--Hb_000707_020 Hb_103118_020--Hb_002518_290 Hb_001307_210 Hb_001307_210 Hb_103118_020--Hb_001307_210 Hb_008748_020 Hb_008748_020 Hb_103118_020--Hb_008748_020 Hb_011377_020 Hb_011377_020 Hb_103118_020--Hb_011377_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.00954 1.09815 2.0767 17.8185 10.2898 115.124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
146.458 259.586 131.411 97.8942 54.2734

CAGE analysis