Hb_021888_090

Information

Type -
Description -
Location Contig21888: 93112-94035
Sequence    

Annotation

kegg
ID mdm:103454545
description putative CCR4-associated factor 1 homolog 8
nr
ID XP_008392346.1
description PREDICTED: putative CCR4-associated factor 1 homolog 8 isoform X1 [Malus domestica]
swissprot
ID Q9S9P2
description Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=1 SV=1
trembl
ID M5XIY4
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023187mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021888_090 0.0 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 isoform X1 [Malus domestica]
2 Hb_011457_020 0.2480854903 - - PREDICTED: uncharacterized protein LOC105649960 [Jatropha curcas]
3 Hb_001341_110 0.2555337763 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
4 Hb_117240_010 0.2985839626 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
5 Hb_002180_010 0.3012144648 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_003209_050 0.3155615329 - - hypothetical protein JCGZ_15683 [Jatropha curcas]
7 Hb_000829_080 0.316279615 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
8 Hb_006615_070 0.3173573705 - - hypothetical protein RCOM_1466910 [Ricinus communis]
9 Hb_000167_020 0.3356888998 - - -
10 Hb_002272_010 0.3443707196 - - conserved hypothetical protein [Ricinus communis]
11 Hb_057098_010 0.3448278374 - - -
12 Hb_005709_010 0.3553569796 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
13 Hb_013818_040 0.3568152701 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
14 Hb_000098_290 0.3583671238 - - -
15 Hb_148891_010 0.3597058638 - - -
16 Hb_009780_080 0.3601282004 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
17 Hb_089140_010 0.3636785303 - - -
18 Hb_005539_020 0.364235037 - - -
19 Hb_062006_010 0.3653272554 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_000094_340 0.3662105751 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]

Gene co-expression network

sample Hb_021888_090 Hb_021888_090 Hb_011457_020 Hb_011457_020 Hb_021888_090--Hb_011457_020 Hb_001341_110 Hb_001341_110 Hb_021888_090--Hb_001341_110 Hb_117240_010 Hb_117240_010 Hb_021888_090--Hb_117240_010 Hb_002180_010 Hb_002180_010 Hb_021888_090--Hb_002180_010 Hb_003209_050 Hb_003209_050 Hb_021888_090--Hb_003209_050 Hb_000829_080 Hb_000829_080 Hb_021888_090--Hb_000829_080 Hb_082730_010 Hb_082730_010 Hb_011457_020--Hb_082730_010 Hb_148891_010 Hb_148891_010 Hb_011457_020--Hb_148891_010 Hb_000713_020 Hb_000713_020 Hb_011457_020--Hb_000713_020 Hb_011242_030 Hb_011242_030 Hb_011457_020--Hb_011242_030 Hb_003020_080 Hb_003020_080 Hb_011457_020--Hb_003020_080 Hb_001277_160 Hb_001277_160 Hb_001341_110--Hb_001277_160 Hb_075230_010 Hb_075230_010 Hb_001341_110--Hb_075230_010 Hb_001277_190 Hb_001277_190 Hb_001341_110--Hb_001277_190 Hb_000086_340 Hb_000086_340 Hb_001341_110--Hb_000086_340 Hb_005000_250 Hb_005000_250 Hb_001341_110--Hb_005000_250 Hb_117240_010--Hb_002180_010 Hb_117240_010--Hb_000829_080 Hb_004788_040 Hb_004788_040 Hb_117240_010--Hb_004788_040 Hb_009012_010 Hb_009012_010 Hb_117240_010--Hb_009012_010 Hb_003100_010 Hb_003100_010 Hb_117240_010--Hb_003100_010 Hb_002180_010--Hb_000829_080 Hb_010288_040 Hb_010288_040 Hb_002180_010--Hb_010288_040 Hb_006922_060 Hb_006922_060 Hb_002180_010--Hb_006922_060 Hb_003398_030 Hb_003398_030 Hb_002180_010--Hb_003398_030 Hb_008289_050 Hb_008289_050 Hb_002180_010--Hb_008289_050 Hb_128051_010 Hb_128051_010 Hb_003209_050--Hb_128051_010 Hb_002282_040 Hb_002282_040 Hb_003209_050--Hb_002282_040 Hb_109268_010 Hb_109268_010 Hb_003209_050--Hb_109268_010 Hb_096224_020 Hb_096224_020 Hb_003209_050--Hb_096224_020 Hb_000693_020 Hb_000693_020 Hb_003209_050--Hb_000693_020 Hb_001022_060 Hb_001022_060 Hb_003209_050--Hb_001022_060 Hb_004732_010 Hb_004732_010 Hb_000829_080--Hb_004732_010 Hb_007451_060 Hb_007451_060 Hb_000829_080--Hb_007451_060 Hb_000829_080--Hb_010288_040 Hb_000829_080--Hb_004788_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0488079 0.089818 0.0387437 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0559744 0.0440201 0 0.0354773 0

CAGE analysis