Hb_021888_150

Information

Type -
Description -
Location Contig21888: 115456-117586
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021888_150 0.0 - - -
2 Hb_000116_570 0.1390577451 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
3 Hb_003106_150 0.1411491738 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
4 Hb_000504_160 0.1454599079 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
5 Hb_002477_150 0.1481043175 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
6 Hb_010883_080 0.1494016261 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
7 Hb_002849_080 0.1498815485 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
8 Hb_001247_230 0.1512605041 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_006316_070 0.1514280465 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
10 Hb_000504_170 0.1539522252 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
11 Hb_161072_030 0.1566342915 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Jatropha curcas]
12 Hb_002609_010 0.1596444585 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
13 Hb_011465_030 0.160058453 - - PREDICTED: B2 protein [Jatropha curcas]
14 Hb_043668_010 0.1602074967 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000265_250 0.1613740285 - - auxilin, putative [Ricinus communis]
16 Hb_001474_030 0.1618571664 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
17 Hb_000770_030 0.1620514592 - - -
18 Hb_148209_020 0.1620798553 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
19 Hb_002977_010 0.1628250002 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
20 Hb_000684_300 0.1638066428 transcription factor TF Family: NF-YB hypothetical protein CICLE_v10012920mg [Citrus clementina]

Gene co-expression network

sample Hb_021888_150 Hb_021888_150 Hb_000116_570 Hb_000116_570 Hb_021888_150--Hb_000116_570 Hb_003106_150 Hb_003106_150 Hb_021888_150--Hb_003106_150 Hb_000504_160 Hb_000504_160 Hb_021888_150--Hb_000504_160 Hb_002477_150 Hb_002477_150 Hb_021888_150--Hb_002477_150 Hb_010883_080 Hb_010883_080 Hb_021888_150--Hb_010883_080 Hb_002849_080 Hb_002849_080 Hb_021888_150--Hb_002849_080 Hb_000016_280 Hb_000016_280 Hb_000116_570--Hb_000016_280 Hb_000116_570--Hb_010883_080 Hb_000093_130 Hb_000093_130 Hb_000116_570--Hb_000093_130 Hb_000685_080 Hb_000685_080 Hb_000116_570--Hb_000685_080 Hb_001227_110 Hb_001227_110 Hb_000116_570--Hb_001227_110 Hb_009646_050 Hb_009646_050 Hb_000116_570--Hb_009646_050 Hb_017075_030 Hb_017075_030 Hb_003106_150--Hb_017075_030 Hb_010128_070 Hb_010128_070 Hb_003106_150--Hb_010128_070 Hb_003106_150--Hb_002849_080 Hb_001157_180 Hb_001157_180 Hb_003106_150--Hb_001157_180 Hb_003106_150--Hb_000504_160 Hb_010128_090 Hb_010128_090 Hb_003106_150--Hb_010128_090 Hb_002659_060 Hb_002659_060 Hb_000504_160--Hb_002659_060 Hb_001396_290 Hb_001396_290 Hb_000504_160--Hb_001396_290 Hb_000343_210 Hb_000343_210 Hb_000504_160--Hb_000343_210 Hb_001946_300 Hb_001946_300 Hb_000504_160--Hb_001946_300 Hb_000640_020 Hb_000640_020 Hb_000504_160--Hb_000640_020 Hb_006829_090 Hb_006829_090 Hb_000504_160--Hb_006829_090 Hb_011465_030 Hb_011465_030 Hb_002477_150--Hb_011465_030 Hb_148209_020 Hb_148209_020 Hb_002477_150--Hb_148209_020 Hb_005946_170 Hb_005946_170 Hb_002477_150--Hb_005946_170 Hb_000265_250 Hb_000265_250 Hb_002477_150--Hb_000265_250 Hb_002477_150--Hb_002659_060 Hb_002477_150--Hb_001946_300 Hb_001473_080 Hb_001473_080 Hb_010883_080--Hb_001473_080 Hb_010883_080--Hb_000016_280 Hb_010883_080--Hb_000685_080 Hb_001922_130 Hb_001922_130 Hb_010883_080--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_010883_080--Hb_000186_260 Hb_002849_080--Hb_148209_020 Hb_006316_070 Hb_006316_070 Hb_002849_080--Hb_006316_070 Hb_002977_010 Hb_002977_010 Hb_002849_080--Hb_002977_010 Hb_002609_010 Hb_002609_010 Hb_002849_080--Hb_002609_010 Hb_002849_080--Hb_011465_030 Hb_005038_020 Hb_005038_020 Hb_002849_080--Hb_005038_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.89536 1.64417 0.320567 0.137395 1.42688 1.17702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.510819 0.468475 0.118909 0.16365 0.395252

CAGE analysis