Hb_021906_010

Information

Type -
Description -
Location Contig21906: 5527-6270
Sequence    

Annotation

kegg
ID pop:POPTR_0001s23300g
description POPTRDRAFT_548704; cysteine protease inhibitor family protein
nr
ID XP_011011604.1
description PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]
swissprot
ID Q8LC76
description Cysteine proteinase inhibitor 7 OS=Arabidopsis thaliana GN=CYS7 PE=2 SV=2
trembl
ID B9GEN9
description Cysteine protease inhibitor family protein OS=Populus trichocarpa GN=POPTR_0001s23300g PE=4 SV=1
Gene Ontology
ID GO:0004869
description cysteine protease inhibitor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22567: 5596-5977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021906_010 0.0 - - PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]
2 Hb_007386_010 0.0860295726 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
3 Hb_002259_140 0.1345657918 - - -
4 Hb_002099_010 0.1450398639 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
5 Hb_004200_030 0.1685406986 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
6 Hb_004097_040 0.170957034 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
7 Hb_000175_580 0.245370425 transcription factor, desease resistance TF Family: C3H, Gene Name: zf-CCCH hypothetical protein POPTR_0013s00890g [Populus trichocarpa]
8 Hb_004241_010 0.2503092028 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
9 Hb_044555_010 0.2622198683 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
10 Hb_160366_010 0.2624257935 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
11 Hb_001911_070 0.2625022853 - - -
12 Hb_000123_200 0.2635298176 - - PREDICTED: WAT1-related protein At2g39510 [Jatropha curcas]
13 Hb_000975_270 0.2643654991 - - PREDICTED: histone H2B.11-like [Phoenix dactylifera]
14 Hb_003120_100 0.2659382765 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
15 Hb_032974_010 0.2670324158 - - -
16 Hb_006376_010 0.2676479599 - - PREDICTED: uncharacterized protein LOC104090718 [Nicotiana tomentosiformis]
17 Hb_002094_040 0.2690275791 - - Organic cation transporter protein [Aegilops tauschii]
18 Hb_002081_170 0.2715852719 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
19 Hb_005714_050 0.2775366544 transcription factor TF Family: B3 hypothetical protein POPTR_1461s00200g [Populus trichocarpa]
20 Hb_008215_030 0.2779351774 - - hypothetical protein 3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_021906_010 Hb_021906_010 Hb_007386_010 Hb_007386_010 Hb_021906_010--Hb_007386_010 Hb_002259_140 Hb_002259_140 Hb_021906_010--Hb_002259_140 Hb_002099_010 Hb_002099_010 Hb_021906_010--Hb_002099_010 Hb_004200_030 Hb_004200_030 Hb_021906_010--Hb_004200_030 Hb_004097_040 Hb_004097_040 Hb_021906_010--Hb_004097_040 Hb_000175_580 Hb_000175_580 Hb_021906_010--Hb_000175_580 Hb_007386_010--Hb_004200_030 Hb_007386_010--Hb_002099_010 Hb_007386_010--Hb_002259_140 Hb_007386_010--Hb_004097_040 Hb_044555_010 Hb_044555_010 Hb_007386_010--Hb_044555_010 Hb_002259_140--Hb_004200_030 Hb_002259_140--Hb_004097_040 Hb_001911_070 Hb_001911_070 Hb_002259_140--Hb_001911_070 Hb_004241_010 Hb_004241_010 Hb_002259_140--Hb_004241_010 Hb_000123_200 Hb_000123_200 Hb_002099_010--Hb_000123_200 Hb_160366_010 Hb_160366_010 Hb_002099_010--Hb_160366_010 Hb_002099_010--Hb_002259_140 Hb_002099_010--Hb_000175_580 Hb_004200_030--Hb_004097_040 Hb_004200_030--Hb_044555_010 Hb_002081_170 Hb_002081_170 Hb_004200_030--Hb_002081_170 Hb_006376_010 Hb_006376_010 Hb_004097_040--Hb_006376_010 Hb_000136_160 Hb_000136_160 Hb_004097_040--Hb_000136_160 Hb_004097_040--Hb_044555_010 Hb_000175_580--Hb_160366_010 Hb_001529_070 Hb_001529_070 Hb_000175_580--Hb_001529_070 Hb_000175_580--Hb_000123_200 Hb_141408_010 Hb_141408_010 Hb_000175_580--Hb_141408_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 4.16869 4.40271 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7865 14.3667 0.186103 0 0

CAGE analysis