Hb_021943_080

Information

Type transcription factor
Description TF Family: SET
Location Contig21943: 92722-98322
Sequence    

Annotation

kegg
ID pmum:103341360
description histone-lysine N-methyltransferase ASHH3
nr
ID XP_012081879.1
description PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
swissprot
ID Q945S8
description Histone-lysine N-methyltransferase ASHH3 OS=Arabidopsis thaliana GN=ASHH3 PE=2 SV=2
trembl
ID A0A067KB84
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_19243 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n-methyltransferase ashh3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22588: 90696-98326 , PASA_asmbl_22590: 95590-98255
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021943_080 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
2 Hb_001158_160 0.0698076904 - - PREDICTED: RNA pseudouridine synthase 7 isoform X1 [Jatropha curcas]
3 Hb_000120_210 0.0707165707 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
4 Hb_001089_070 0.0713491954 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
5 Hb_016777_040 0.0720389496 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
6 Hb_004096_240 0.0729303139 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
7 Hb_077026_010 0.0730277766 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
8 Hb_000847_080 0.0744626638 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
9 Hb_002889_010 0.0757423062 - - ubx domain-containing, putative [Ricinus communis]
10 Hb_002073_190 0.0767531989 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
11 Hb_003186_020 0.0788891588 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
12 Hb_001153_210 0.0790831275 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
13 Hb_004020_040 0.0794629233 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
14 Hb_000737_030 0.079562519 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
15 Hb_003462_070 0.0811314001 - - arsenical pump-driving atpase, putative [Ricinus communis]
16 Hb_031284_010 0.0826862207 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
17 Hb_000134_270 0.0827994259 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
18 Hb_000238_040 0.0842929372 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
19 Hb_030414_040 0.0847949328 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
20 Hb_000175_410 0.085120874 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_021943_080 Hb_021943_080 Hb_001158_160 Hb_001158_160 Hb_021943_080--Hb_001158_160 Hb_000120_210 Hb_000120_210 Hb_021943_080--Hb_000120_210 Hb_001089_070 Hb_001089_070 Hb_021943_080--Hb_001089_070 Hb_016777_040 Hb_016777_040 Hb_021943_080--Hb_016777_040 Hb_004096_240 Hb_004096_240 Hb_021943_080--Hb_004096_240 Hb_077026_010 Hb_077026_010 Hb_021943_080--Hb_077026_010 Hb_030414_040 Hb_030414_040 Hb_001158_160--Hb_030414_040 Hb_000826_030 Hb_000826_030 Hb_001158_160--Hb_000826_030 Hb_031284_010 Hb_031284_010 Hb_001158_160--Hb_031284_010 Hb_001158_160--Hb_000120_210 Hb_001158_160--Hb_004096_240 Hb_000120_210--Hb_004096_240 Hb_000120_210--Hb_030414_040 Hb_000120_210--Hb_031284_010 Hb_001153_210 Hb_001153_210 Hb_000120_210--Hb_001153_210 Hb_000111_170 Hb_000111_170 Hb_000120_210--Hb_000111_170 Hb_001089_070--Hb_016777_040 Hb_005289_040 Hb_005289_040 Hb_001089_070--Hb_005289_040 Hb_000603_030 Hb_000603_030 Hb_001089_070--Hb_000603_030 Hb_001005_030 Hb_001005_030 Hb_001089_070--Hb_001005_030 Hb_005588_090 Hb_005588_090 Hb_001089_070--Hb_005588_090 Hb_002889_010 Hb_002889_010 Hb_016777_040--Hb_002889_010 Hb_002471_240 Hb_002471_240 Hb_016777_040--Hb_002471_240 Hb_001377_310 Hb_001377_310 Hb_016777_040--Hb_001377_310 Hb_000373_080 Hb_000373_080 Hb_016777_040--Hb_000373_080 Hb_002805_190 Hb_002805_190 Hb_016777_040--Hb_002805_190 Hb_004096_240--Hb_030414_040 Hb_004096_240--Hb_031284_010 Hb_000375_390 Hb_000375_390 Hb_004096_240--Hb_000375_390 Hb_003186_020 Hb_003186_020 Hb_004096_240--Hb_003186_020 Hb_000847_080 Hb_000847_080 Hb_077026_010--Hb_000847_080 Hb_002874_180 Hb_002874_180 Hb_077026_010--Hb_002874_180 Hb_077026_010--Hb_000120_210 Hb_077026_010--Hb_004096_240 Hb_000663_020 Hb_000663_020 Hb_077026_010--Hb_000663_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.59656 1.87872 3.90153 2.74071 2.57644 2.57101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.27869 1.59586 0.931547 2.40078 3.11374

CAGE analysis