Hb_021943_090

Information

Type -
Description -
Location Contig21943: 102384-106643
Sequence    

Annotation

kegg
ID rcu:RCOM_0364940
description methylenetetrahydrofolate reductase, putative (EC:1.5.1.20)
nr
ID XP_012081878.1
description PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
swissprot
ID Q75HE6
description Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1
trembl
ID A0A067KCG2
description Methylenetetrahydrofolate reductase OS=Jatropha curcas GN=JCGZ_19242 PE=3 SV=1
Gene Ontology
ID GO:0005829
description probable methylenetetrahydrofolate reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22591: 102516-104928
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021943_090 0.0 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
2 Hb_003994_030 0.0898244623 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
3 Hb_000979_130 0.0906705119 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
4 Hb_000367_180 0.0998215697 - - Heparanase-2, putative [Ricinus communis]
5 Hb_000260_510 0.1027890129 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
6 Hb_000800_090 0.1049354361 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
7 Hb_000665_180 0.1055469354 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
8 Hb_002193_060 0.1056385421 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
9 Hb_000197_190 0.1056934041 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
10 Hb_001957_010 0.106643052 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
11 Hb_001663_040 0.1073282251 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
12 Hb_005701_120 0.1077069104 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
13 Hb_097495_010 0.1091986076 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
14 Hb_000012_080 0.1111664145 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
15 Hb_000395_110 0.1113246798 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
16 Hb_006829_060 0.1126768086 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
17 Hb_000110_060 0.1127706806 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
18 Hb_003207_020 0.1138320904 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
19 Hb_000019_180 0.1153174521 transcription factor TF Family: SET Histone-lysine N-methyltransferase family protein [Populus trichocarpa]
20 Hb_001507_120 0.1162713313 - - transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_021943_090 Hb_021943_090 Hb_003994_030 Hb_003994_030 Hb_021943_090--Hb_003994_030 Hb_000979_130 Hb_000979_130 Hb_021943_090--Hb_000979_130 Hb_000367_180 Hb_000367_180 Hb_021943_090--Hb_000367_180 Hb_000260_510 Hb_000260_510 Hb_021943_090--Hb_000260_510 Hb_000800_090 Hb_000800_090 Hb_021943_090--Hb_000800_090 Hb_000665_180 Hb_000665_180 Hb_021943_090--Hb_000665_180 Hb_001957_010 Hb_001957_010 Hb_003994_030--Hb_001957_010 Hb_003207_020 Hb_003207_020 Hb_003994_030--Hb_003207_020 Hb_002110_100 Hb_002110_100 Hb_003994_030--Hb_002110_100 Hb_002193_060 Hb_002193_060 Hb_003994_030--Hb_002193_060 Hb_005701_120 Hb_005701_120 Hb_003994_030--Hb_005701_120 Hb_005694_060 Hb_005694_060 Hb_000979_130--Hb_005694_060 Hb_000979_130--Hb_000260_510 Hb_000979_130--Hb_000367_180 Hb_015884_020 Hb_015884_020 Hb_000979_130--Hb_015884_020 Hb_019654_020 Hb_019654_020 Hb_000979_130--Hb_019654_020 Hb_000395_110 Hb_000395_110 Hb_000979_130--Hb_000395_110 Hb_000367_180--Hb_019654_020 Hb_000007_060 Hb_000007_060 Hb_000367_180--Hb_000007_060 Hb_065968_010 Hb_065968_010 Hb_000367_180--Hb_065968_010 Hb_000367_180--Hb_015884_020 Hb_000367_180--Hb_000260_510 Hb_000260_510--Hb_000395_110 Hb_010672_020 Hb_010672_020 Hb_000260_510--Hb_010672_020 Hb_000260_510--Hb_000007_060 Hb_001507_120 Hb_001507_120 Hb_000260_510--Hb_001507_120 Hb_000800_090--Hb_005701_120 Hb_000025_190 Hb_000025_190 Hb_000800_090--Hb_000025_190 Hb_001946_310 Hb_001946_310 Hb_000800_090--Hb_001946_310 Hb_004046_030 Hb_004046_030 Hb_000800_090--Hb_004046_030 Hb_000185_220 Hb_000185_220 Hb_000800_090--Hb_000185_220 Hb_005648_010 Hb_005648_010 Hb_000800_090--Hb_005648_010 Hb_000008_340 Hb_000008_340 Hb_000665_180--Hb_000008_340 Hb_000665_180--Hb_000395_110 Hb_000638_070 Hb_000638_070 Hb_000665_180--Hb_000638_070 Hb_185830_060 Hb_185830_060 Hb_000665_180--Hb_185830_060 Hb_002955_020 Hb_002955_020 Hb_000665_180--Hb_002955_020 Hb_000665_180--Hb_002193_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.38782 5.00886 19.242 34.1344 4.80476 6.17629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.2285 8.72679 15.5093 19.2493 24.3814

CAGE analysis