Hb_022092_090

Information

Type -
Description -
Location Contig22092: 48442-52569
Sequence    

Annotation

kegg
ID rcu:RCOM_1175990
description Peroxisomal membrane protein, putative
nr
ID XP_012088332.1
description PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
swissprot
ID Q6CAW5
description Protein SYM1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SYM1 PE=3 SV=1
trembl
ID A0A067JXB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25826 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein sym1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22754: 48577-48998 , PASA_asmbl_22755: 49527-52476
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022092_090 0.0 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
2 Hb_000963_190 0.1094229993 - - Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]
3 Hb_011671_220 0.1101041508 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001019_060 0.1135474935 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
5 Hb_029510_140 0.1167706853 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
6 Hb_000364_150 0.1213584327 - - -
7 Hb_005117_010 0.1219832572 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
8 Hb_000014_150 0.1227308509 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
9 Hb_000384_090 0.1246452737 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
10 Hb_063134_010 0.1265094032 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
11 Hb_005656_050 0.1267009556 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
12 Hb_004055_140 0.1270123104 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
13 Hb_114343_010 0.1287044648 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
14 Hb_033594_130 0.1288568027 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
15 Hb_094947_010 0.1295557369 - - surfeit locus protein, putative [Ricinus communis]
16 Hb_001266_080 0.1305721859 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
17 Hb_000062_420 0.1334230092 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003005_020 0.1344883749 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
19 Hb_000914_070 0.1346062852 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
20 Hb_007193_100 0.1353296133 - - syntaxin family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_022092_090 Hb_022092_090 Hb_000963_190 Hb_000963_190 Hb_022092_090--Hb_000963_190 Hb_011671_220 Hb_011671_220 Hb_022092_090--Hb_011671_220 Hb_001019_060 Hb_001019_060 Hb_022092_090--Hb_001019_060 Hb_029510_140 Hb_029510_140 Hb_022092_090--Hb_029510_140 Hb_000364_150 Hb_000364_150 Hb_022092_090--Hb_000364_150 Hb_005117_010 Hb_005117_010 Hb_022092_090--Hb_005117_010 Hb_007101_100 Hb_007101_100 Hb_000963_190--Hb_007101_100 Hb_000676_290 Hb_000676_290 Hb_000963_190--Hb_000676_290 Hb_001235_070 Hb_001235_070 Hb_000963_190--Hb_001235_070 Hb_007193_100 Hb_007193_100 Hb_000963_190--Hb_007193_100 Hb_001454_140 Hb_001454_140 Hb_000963_190--Hb_001454_140 Hb_071130_030 Hb_071130_030 Hb_000963_190--Hb_071130_030 Hb_011671_220--Hb_005117_010 Hb_020000_010 Hb_020000_010 Hb_011671_220--Hb_020000_010 Hb_000230_540 Hb_000230_540 Hb_011671_220--Hb_000230_540 Hb_004055_140 Hb_004055_140 Hb_011671_220--Hb_004055_140 Hb_010436_060 Hb_010436_060 Hb_011671_220--Hb_010436_060 Hb_002551_020 Hb_002551_020 Hb_011671_220--Hb_002551_020 Hb_007426_030 Hb_007426_030 Hb_001019_060--Hb_007426_030 Hb_000103_180 Hb_000103_180 Hb_001019_060--Hb_000103_180 Hb_000538_200 Hb_000538_200 Hb_001019_060--Hb_000538_200 Hb_002079_010 Hb_002079_010 Hb_001019_060--Hb_002079_010 Hb_005489_110 Hb_005489_110 Hb_001019_060--Hb_005489_110 Hb_000808_230 Hb_000808_230 Hb_001019_060--Hb_000808_230 Hb_000175_070 Hb_000175_070 Hb_029510_140--Hb_000175_070 Hb_029510_140--Hb_007193_100 Hb_063134_010 Hb_063134_010 Hb_029510_140--Hb_063134_010 Hb_001518_040 Hb_001518_040 Hb_029510_140--Hb_001518_040 Hb_003005_020 Hb_003005_020 Hb_029510_140--Hb_003005_020 Hb_010436_070 Hb_010436_070 Hb_029510_140--Hb_010436_070 Hb_002023_020 Hb_002023_020 Hb_000364_150--Hb_002023_020 Hb_000914_070 Hb_000914_070 Hb_000364_150--Hb_000914_070 Hb_137403_010 Hb_137403_010 Hb_000364_150--Hb_137403_010 Hb_039253_010 Hb_039253_010 Hb_000364_150--Hb_039253_010 Hb_000364_150--Hb_004055_140 Hb_009117_030 Hb_009117_030 Hb_000364_150--Hb_009117_030 Hb_005117_010--Hb_000230_540 Hb_005117_010--Hb_004055_140 Hb_006641_010 Hb_006641_010 Hb_005117_010--Hb_006641_010 Hb_005117_010--Hb_010436_060 Hb_005117_010--Hb_000914_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.68184 0.769648 0.875742 1.97045 5.62734 12.1374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.82257 6.59105 5.11502 2.35913 4.56273

CAGE analysis