Hb_022092_100

Information

Type -
Description -
Location Contig22092: 56131-56508
Sequence    

Annotation

kegg
ID rcu:RCOM_1175980
description hypothetical protein
nr
ID XP_002517961.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RW42
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1175980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22758: 55637-56577 , PASA_asmbl_22759: 55637-56577
cDNA
(Sanger)
(ID:Location)		 001_P09.ab1: 55867-56555 , 009_E11.ab1: 55762-56545 , 012_J15.ab1: 55864-56555 , 013_O06.ab1: 55982-56550 , 016_C12.ab1: 55918-56533 , 030_B20.ab1: 55860-56555 , 034_C01.ab1: 55858-56555 , 035_P08.ab1: 55866-56554 , 038_C16.ab1: 55860-56555 , 040_D12.ab1: 56164-56554 , 040_P22.ab1: 55860-56555 , 041_I15.ab1: 56303-56555 , 045_B02.ab1: 55953-56547 , 047_P06.ab1: 56007-56555 , 050_C09.ab1: 55988-56531

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022092_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000853_020 0.0403475581 - - PREDICTED: endoglucanase 17 [Populus euphratica]
3 Hb_000691_060 0.0427924849 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
4 Hb_000175_160 0.0448095972 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
5 Hb_003667_030 0.0481732141 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
6 Hb_000489_050 0.0482312325 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
7 Hb_000334_100 0.0485310292 - - hypothetical protein JCGZ_16788 [Jatropha curcas]
8 Hb_002151_140 0.0486012413 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
9 Hb_000784_050 0.0488604199 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
10 Hb_000280_070 0.0489507909 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
11 Hb_000008_100 0.0490922933 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
12 Hb_002391_280 0.0493119077 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
13 Hb_000307_080 0.0493365642 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002817_020 0.0493921055 - - -
15 Hb_000173_070 0.0495599401 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
16 Hb_003995_040 0.0497240306 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
17 Hb_000417_240 0.0497589062 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
18 Hb_000221_010 0.0504856788 - - polyprotein [Oryza australiensis]
19 Hb_007975_070 0.0512199328 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
20 Hb_001019_110 0.0514453896 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]

Gene co-expression network

sample Hb_022092_100 Hb_022092_100 Hb_000853_020 Hb_000853_020 Hb_022092_100--Hb_000853_020 Hb_000691_060 Hb_000691_060 Hb_022092_100--Hb_000691_060 Hb_000175_160 Hb_000175_160 Hb_022092_100--Hb_000175_160 Hb_003667_030 Hb_003667_030 Hb_022092_100--Hb_003667_030 Hb_000489_050 Hb_000489_050 Hb_022092_100--Hb_000489_050 Hb_000334_100 Hb_000334_100 Hb_022092_100--Hb_000334_100 Hb_000853_020--Hb_000175_160 Hb_001969_030 Hb_001969_030 Hb_000853_020--Hb_001969_030 Hb_000853_020--Hb_000691_060 Hb_000853_020--Hb_000334_100 Hb_000008_100 Hb_000008_100 Hb_000853_020--Hb_000008_100 Hb_090511_010 Hb_090511_010 Hb_000691_060--Hb_090511_010 Hb_012675_030 Hb_012675_030 Hb_000691_060--Hb_012675_030 Hb_130862_010 Hb_130862_010 Hb_000691_060--Hb_130862_010 Hb_000769_040 Hb_000769_040 Hb_000691_060--Hb_000769_040 Hb_022862_010 Hb_022862_010 Hb_000691_060--Hb_022862_010 Hb_105767_030 Hb_105767_030 Hb_000691_060--Hb_105767_030 Hb_000175_160--Hb_000691_060 Hb_004117_240 Hb_004117_240 Hb_000175_160--Hb_004117_240 Hb_000307_080 Hb_000307_080 Hb_000175_160--Hb_000307_080 Hb_000173_070 Hb_000173_070 Hb_000175_160--Hb_000173_070 Hb_003667_030--Hb_000489_050 Hb_003667_030--Hb_000334_100 Hb_002151_140 Hb_002151_140 Hb_003667_030--Hb_002151_140 Hb_000784_050 Hb_000784_050 Hb_003667_030--Hb_000784_050 Hb_000280_070 Hb_000280_070 Hb_003667_030--Hb_000280_070 Hb_003667_030--Hb_000008_100 Hb_000489_050--Hb_000334_100 Hb_000489_050--Hb_000008_100 Hb_002391_280 Hb_002391_280 Hb_000489_050--Hb_002391_280 Hb_002817_020 Hb_002817_020 Hb_000489_050--Hb_002817_020 Hb_000489_050--Hb_002151_140 Hb_000334_100--Hb_000008_100 Hb_000334_100--Hb_002391_280 Hb_000334_100--Hb_002817_020 Hb_000221_010 Hb_000221_010 Hb_000334_100--Hb_000221_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.562118 0.266359 1240.91 362.574 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11356 0.349915 0.274854 0.0758941 4.82144

CAGE analysis